# N2-Fixing Fontibacillus forbon sp. nov., a Novel Species from the Plant Rhizosphere

**Authors:** Rui Hu, Yimin Shang, Weilong Zhang, Chengao Song, Renzong Wang, Sanfeng Chen

PMC · DOI: 10.3390/microorganisms14010049 · 2025-12-25

## TL;DR

A new nitrogen-fixing bacteria species, Fontibacillus forbon, was discovered in plant roots and could be used as a natural fertilizer.

## Contribution

Identification of a novel nitrogen-fixing species Fontibacillus forbon sp. nov. with potential biofertilizer applications.

## Key findings

- Fontibacillus forbon sp. nov. can fix nitrogen and grow without nitrogen sources.
- Genomic analysis confirmed BL-9T as a new species with distinct DNA and gene features.
- Phylogenetic and chemotaxonomic data support BL-9T as a novel Fontibacillus species.

## Abstract

N2-fixing bacteria have great potential to be used as biofertilizer in agriculture to promote plant growth via nitrogen fixation. In this study, a novel species Fontibacillus forbon sp. nov., with strain BL-9T as the type strain, was isolated from the rhizosphere of Fraxinus chinensis. Strain BL-9T was able to fix nitrogen and grow on nitrogen-free medium. Phylogenetic analysis of 16S rRNA gene revealed that strain BL-9T was most closely related to Fontibacillus phaseoli BAPVE7B (98.03%), followed by Fontibacillus solani A4STR04 (96.72%), Fontibacillus panacisegetis (96.6%), Paenibacillus vini (96.6%), and Paenibacillus segetis DB13260 (96.57%). The phylogenomic tree supported that strain BL-9T was most closely related to F. phaseoli BAPVE7B. The digital DNA-DNA hybridization (dDDH) and average nucleotide identity (ANI) between strain BL-9T and its closely related type strain, F. phaseoli BAPVE7B, were 42.5% and 90.94%, respectively, which were below the values (70% for dDDH and 95% for ANI) for species discrimination. The DNA G+C content of strain BL-9T was 49.7%. The genome of strain BL-9T had a nif (nitrogen fixation) gene cluster containing 10 genes (nifB nifH nifD nifK nifE nifN nifX orf1 hesA nifV). The predominant fatty acid was anteiso-C15:0, the major menaquinone was MK-7, and the major polar lipid was diphosphatidylglycerol. Strain BL-9T and its closely related species of Fontibacillus had some common and distinguished physiological characteristics. Based on genomic, phylogenetic, chemotaxonomic, and phenotypic features, strain BL-9T represents a novel species of the genus Fontibacillus. The name proposed for this species is Fontibacillus forbon sp. nov., with the type strain BL-9T.

## Linked entities

- **Genes:** nifB (FeMo cofactor biosynthesis protein NifB) [NCBI Gene 1451989], nifH (nitrogenase iron protein) [NCBI Gene 1451768], nifD (nitrogenase molybdenum-iron protein alpha chain) [NCBI Gene 1475791], NIFK (nucleolar protein interacting with the FHA domain of MKI67) [NCBI Gene 84365], nifE (nitrogenase iron-molybdenum cofactor biosynthesis protein NifE) [NCBI Gene 1471834], nifN (nitrogenase iron-molybdenum cofactor biosynthesis protein NifN) [NCBI Gene 23846659], nifX (nitrogen fixation protein NifX) [NCBI Gene 24261387], NCKIPSD (NCK interacting protein with SH3 domain) [NCBI Gene 51517], LOC145229409 (uncharacterized LOC145229409) [NCBI Gene 145229409], nifV (homocitrate synthase) [NCBI Gene 15139329]
- **Species:** Fontibacillus panacisegetis (taxon 670482), Paenibacillus vini (taxon 1476024), Fraxinus chinensis (taxon 56033)

## Full-text entities

- **Chemicals:** anteiso-C15:0 (-), fatty acid (MESH:D005227), lipid (MESH:D008055), nitrogen (MESH:D009584), MK-7 (MESH:C062629), diphosphatidylglycerol (MESH:D002308), menaquinone (MESH:D024482)
- **Species:** Fraxinus chinensis (species) [taxon 56033], Paenibacillus vini (species) [taxon 1476024], Fontibacillus panacisegetis (species) [taxon 670482]

## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12843690/full.md

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Source: https://tomesphere.com/paper/PMC12843690