# Genetic Variants in Liver Cirrhosis: Classifications, Mechanisms, and Implications for Clinical Practice

**Authors:** Roshni Pushpa Raghavan, Kirti Theresa Alexander, Shine Sadasivan, Chetan Parmar, Manikandan Kathirvel

PMC · DOI: 10.3390/jpm16010029 · Journal of Personalized Medicine · 2026-01-05

## TL;DR

This paper reviews how genetic variants influence cirrhosis risk and progression, offering insights for personalized treatment.

## Contribution

It introduces a novel framework categorizing genetic variants into four mechanistic domains for cirrhosis risk.

## Key findings

- Genetic variants like PNPLA3 and TM6SF2 are linked to cirrhosis progression and etiology.
- Polygenic risk scores and multi-omic approaches show potential for early risk stratification.
- Larger studies are needed to validate clinical applications of genetic insights in cirrhosis.

## Abstract

Background: Cirrhosis represents the final common pathway of chronic liver injury, arising from diverse etiologies such as metabolic, viral, autoimmune, and alcohol-related liver diseases. Despite similar exposures, disease progression varies considerably among individuals, suggesting a genetic contribution to susceptibility and outcome. Objective: This narrative review examines how specific genetic variants influence the risk, progression, and phenotypic expression of cirrhosis. It provides a structured synthesis of established and emerging gene associations, emphasizing their biological mechanisms and potential clinical relevance. Methods: This narrative review synthesizes evidence from all major biomedical and scientific databases, including PubMed, Scopus, Web of Science, and Google Scholar, as well as reference lists of relevant articles, covering literature published between 2005 and 2025 on genetic polymorphisms associated with cirrhosis and its etiological subtypes. Content: Variants are categorized into four mechanistic domains—metabolic regulation, immune modulation, liver enzyme activity, and ancestry-linked expression patterns—representing a novel integrative framework for understanding genetic risk in cirrhosis. Well-characterized variants such as PNPLA3, TM6SF2, HSD17B13, and MBOAT7, along with less commonly studied loci and chromosomal alterations, are discussed in relation to major etiologies, including MASLD/MASH, viral hepatitis, alcohol-related liver disease, and autoimmune conditions. Conclusions: Genetic insights into cirrhosis offer pathways toward early risk stratification and personalized disease management. While polygenic risk scores and multi-omic integration show promise, their clinical translation remains exploratory and requires further validation through large-scale prospective studies.

## Linked entities

- **Genes:** PNPLA3 (patatin like domain 3, 1-acylglycerol-3-phosphate O-acyltransferase) [NCBI Gene 80339], TM6SF2 (transmembrane 6 superfamily member 2) [NCBI Gene 53345], HSD17B13 (hydroxysteroid 17-beta dehydrogenase 13) [NCBI Gene 345275], MBOAT7 (membrane bound acylglycerophosphatidylinositol O-acyltransferase MBOAT7) [NCBI Gene 79143]
- **Diseases:** cirrhosis (MONDO:0005155), viral hepatitis (MONDO:0006011)

## Full-text entities

- **Genes:** PNPLA3 (patatin like domain 3, 1-acylglycerol-3-phosphate O-acyltransferase) [NCBI Gene 80339] {aka ADPN, C22orf20, iPLA(2)epsilon}, MBOAT7 (membrane bound acylglycerophosphatidylinositol O-acyltransferase MBOAT7) [NCBI Gene 79143] {aka BB1, LENG4, LPIAT, LPIAT1, LPLAT, LPLAT11}, HSD17B13 (hydroxysteroid 17-beta dehydrogenase 13) [NCBI Gene 345275] {aka FLDP, HMFN0376, NIIL497, SCDR9, SDR16C3}, TM6SF2 (transmembrane 6 superfamily member 2) [NCBI Gene 53345]
- **Diseases:** viral hepatitis (MESH:D014777), alcohol-related liver disease (MESH:D008108), chronic liver injury (MESH:D056487), autoimmune conditions (MESH:D001327), Cirrhosis (MESH:D005355), Liver Cirrhosis (MESH:D008103)

## Full text

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## Figures

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## References

87 references — full list in the complete paper: https://tomesphere.com/paper/PMC12842787/full.md

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Source: https://tomesphere.com/paper/PMC12842787