# Discovery and Preliminary Characterization of Lactose-Transforming Enzymes in Ewingella americana L47: A Genomic, Biochemical, and In Silico Approach

**Authors:** Katherine Rivero, Rodrigo Valenzuela, Inaira Rivero, Pedro General, Nicole Neira, Fernanda Contreras, Jans Alzate-Morales, Claudia Muñoz-Villagrán, Carlos Vera, Mauricio Arenas-Salinas, Felipe Arenas

PMC · DOI: 10.3390/ijms27021128 · International Journal of Molecular Sciences · 2026-01-22

## TL;DR

This study explores enzymes in Ewingella americana L47 for converting lactose into D-tagatose, a low-calorie sweetener, using genomic, biochemical, and computational methods.

## Contribution

The study identifies and characterizes novel lactose-transforming enzymes from an Antarctic bacterial isolate for D-tagatose production.

## Key findings

- Genome analysis revealed one L-arabinose isomerase and three β-galactosidase genes in Ewingella americana L47.
- Recombinant AraA produced ~18% tagatose from galactose, but β-galactosidases were mostly insoluble in E. coli.
- BgaA showed the most consistent activity for lactose hydrolysis, while AraA performance limits the overall process efficiency.

## Abstract

D-tagatose is a high-value, low-calorie sweetener that can be produced from dairy lactose via a two-step enzymatic route: lactose hydrolysis to galactose followed by galactose isomerization to tagatose. Here, we combined genomics, in silico structural analysis, and biochemical assays to evaluate the lactose-to-tagatose conversion potential of an Antarctic isolate, L47, identified as Ewingella americana (NCBI accession SAMN54554459). Genome mining revealed one L-arabinose isomerase gene (araA) and three β-galactosidase genes (bgaA, bglY, lacZ), an uncommon combination in a single bacterium. Recombinant AraA was produced in Escherichia coli and biochemically characterized, showing Mn2+ dependence and measurable D-galactose isomerization, reaching ~18% tagatose from 100 mM galactose after 48 h under the tested conditions. In contrast, the β-galactosidases were predominantly recovered as insoluble aggregates in E. coli; therefore, β-galactosidase activity was assessed using washed inclusion-body preparations. Under these conditions, BgaA displayed the most consistent o-NPG hydrolyzing activity, whereas BglY and LacZ did not yield reproducible activity. Overall, our results identify BgaA as the most tractable lactose-hydrolyzing candidate from L47 in the current workflow and indicate that AraA performance is the principal bottleneck toward an efficient lactose-to-tagatose process, motivating future optimization at the enzyme and process levels.

## Linked entities

- **Genes:** araA (L-arabinose isomerase) [NCBI Gene 913468], bgaA (LPXTG-anchored adhesin/beta-galactosidase BgaA) [NCBI Gene 45217994], hns (DNA-binding transcriptional dual regulator H-NS) [NCBI Gene 945829], lacZ (beta-D-galactosidase) [NCBI Gene 914499]
- **Proteins:** araA (L-arabinose isomerase), bgaA (LPXTG-anchored adhesin/beta-galactosidase BgaA), hns (DNA-binding transcriptional dual regulator H-NS), lacZ (beta-D-galactosidase)
- **Chemicals:** D-tagatose (PubChem CID 92092), lactose (PubChem CID 6134), galactose (PubChem CID 6036), Mn2+ (PubChem CID 27854), o-NPG (PubChem CID 92941)
- **Species:** Ewingella americana (taxon 41202), Escherichia coli (taxon 562)

## Full-text entities

- **Chemicals:** o-NPG (MESH:C055012), D-galactose (MESH:D005690), Mn2+ (-), D-tagatose (MESH:C030192), lactose (MESH:D007785)
- **Species:** Lobophora sp. 47 (species) [taxon 1853010], Ewingella americana (species) [taxon 41202]

## Full text

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## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12842569/full.md

## References

58 references — full list in the complete paper: https://tomesphere.com/paper/PMC12842569/full.md

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Source: https://tomesphere.com/paper/PMC12842569