# Diagnostic, Prognostic, and Predictive Molecular Biomarkers in Head and Neck Squamous Cell Carcinoma: A Comprehensive Review

**Authors:** Adam Michcik, Barbara Wojciechowska, Jakub Tarnawski, Piotr Choma, Adam Polcyn, Łukasz Garbacewicz, Maciej Sikora, Paolo Iacoviello, Tomasz Wach, Barbara Drogoszewska

PMC · DOI: 10.3390/jcm15020769 · Journal of Clinical Medicine · 2026-01-17

## TL;DR

This review explores molecular biomarkers for head and neck cancer, highlighting new markers and the shift toward multi-omic approaches for better diagnosis and treatment.

## Contribution

The paper introduces a comprehensive review of recent molecular biomarkers and emphasizes the need for multi-omic and AI-driven strategies in HNSCC.

## Key findings

- High-risk lncRNA signatures and immune checkpoints like TIGIT show strong prognostic value.
- Epigenetic silencing of p16 affects only 25% of patients, suggesting limited utility as a universal marker.
- Multi-omic approaches integrating DNA, RNA, proteins, and metabolic indicators are recommended for future clinical use.

## Abstract

Background: Head and neck squamous cell carcinoma (HNSCC) remains the seventh most common cancer worldwide, characterized by late-stage diagnosis and poor 5-year survival rates. Oral squamous cell carcinoma (OSCC) is the most prevalent subtype. The identification of robust diagnostic, prognostic, and predictive markers is essential for personalized treatment monitoring. Methods: Following PRISMA and PICO standards, we conducted a comprehensive review of studies published over the past 10 years across PubMed/MEDLINE, Scopus, and Web of Science. The selection process was facilitated by AI-powered tools (Rayyan QCRI), and study quality was assessed using NOS or QUIPS. Results: 34 articles (including meta-analyses and original trials) were identified. Established clinical markers, such as p16-positivity (HR ≈ 0.55) and PD-L1 (CPS), remain significant. However, the molecular landscape is expanding to include high-risk lncRNA signatures (HR ≈ 2.50), immune checkpoints such as TIGIT (HR ≈ 1.85), and genomic alterations, including IL-10 promoter polymorphisms. We highlight that epigenetic silencing of p16 affects only about 25% of patients, while metabolic regulators (e.g., GLUT-1) and protein markers (e.g., MASPIN) offer critical predictive value for therapy response. Conclusions: The diagnostic and predictive paradigm is shifting toward a multi-omic approach that integrates DNA, RNA, proteins, and metabolic indicators. Future clinical use will rely on AI-driven multimarker panels and non-invasive liquid biopsies to enable real-time monitoring and de-escalation of treatment strategies.

## Linked entities

- **Genes:** CDKN2A (cyclin dependent kinase inhibitor 2A) [NCBI Gene 1029], CD274 (CD274 molecule) [NCBI Gene 29126], TIGIT (T cell immunoreceptor with Ig and ITIM domains) [NCBI Gene 201633], IL10 (interleukin 10) [NCBI Gene 3586], SLC2A1 (solute carrier family 2 member 1) [NCBI Gene 6513], SERPINB5 (serpin family B member 5) [NCBI Gene 5268]
- **Proteins:** CD274 (CD274 molecule), TIGIT (T cell immunoreceptor with Ig and ITIM domains), SLC2A1 (solute carrier family 2 member 1), SERPINB5 (serpin family B member 5)
- **Diseases:** Head and neck squamous cell carcinoma (MONDO:0010150), Oral squamous cell carcinoma (MONDO:0004958)

## Full-text entities

- **Genes:** CDKN2A (cyclin dependent kinase inhibitor 2A) [NCBI Gene 1029] {aka ARF, CAI2, CDK4I, CDKN2, CMM2, INK4}, SERPINB5 (serpin family B member 5) [NCBI Gene 5268] {aka PI5, maspin}, SLC2A1 (solute carrier family 2 member 1) [NCBI Gene 6513] {aka CSE, DYT17, DYT18, DYT9, EIG12, GLUT}, TIGIT (T cell immunoreceptor with Ig and ITIM domains) [NCBI Gene 201633] {aka VSIG9, VSTM3, WUCAM}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}
- **Diseases:** HNSCC (MESH:D000077195), cancer (MESH:D009369)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

1 figure with captions in the complete paper: https://tomesphere.com/paper/PMC12842548/full.md

## References

70 references — full list in the complete paper: https://tomesphere.com/paper/PMC12842548/full.md

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Source: https://tomesphere.com/paper/PMC12842548