# The Putative RNA Methyltransferase Modulates T3SS Expression and Host NF-κB Activation via T6SS-Mediated Translocation in Pseudomonas aeruginosa

**Authors:** YuRim An, Yeji Lee, Yongxin Jin, Weihui Wu, Un-Hwan Ha

PMC · DOI: 10.3390/ijms27020818 · 2026-01-14

## TL;DR

A bacterial RNA methyltransferase called PA3840 reduces inflammation and virulence by suppressing T3SS and NF-κB signaling in Pseudomonas aeruginosa.

## Contribution

Identifies PA3840 as a novel RNA methyltransferase that modulates T3SS and host inflammation via T6SS-mediated translocation in P. aeruginosa.

## Key findings

- PA3840 deletion impairs twitching motility but not swimming or swarming in P. aeruginosa.
- PA3840 suppresses T3SS gene expression and reduces host cell cytotoxicity and inflammation.
- PA3840 is translocated into host cells via T6SS, but its function requires bacterial mechanisms rather than direct intracellular action.

## Abstract

RNA methyltransferases are key regulators of bacterial physiology, yet their specific roles in virulence remain poorly defined. In this study, we characterize PA3840, a putative RNA methyltransferase in Pseudomonas aeruginosa (P. aeruginosa). Deletion of PA3840 specifically impaired twitching motility without affecting bacterial growth, swimming, or swarming. Notably, PA3840 was found to suppress the expression of Type III Secretion System (T3SS) genes, thereby reducing cytotoxicity and host cell rounding. Consistent with these observations, PA3840 expression attenuated pro-inflammatory cytokine production in epithelial cells by inhibiting NF-κB activation. Mechanistic analysis revealed that PA3840 is translocated into host cells in a Type VI Secretion System (T6SS)-dependent manner. This translocation was reduced by hcp1 deletion and nearly abolished by a double deletion of pscF and hcp3, suggesting the involvement of multiple T6SS components and potential interplay with T3SS machinery. However, direct transfection of PA3840 into host cells failed to suppress cytokine expression, indicating that its immunomodulatory function is mediated by a bacterium-intrinsic mechanism rather than direct intracellular action. Collectively, these findings identify PA3840 as a translocated effector that modulates twitching motility and dampens host inflammation by repressing T3SS and NF-κB signaling, revealing a novel layer of post-transcriptional virulence regulation in P. aeruginosa.

## Linked entities

- **Genes:** PA3840 (SAM-dependent methyltransferase) [NCBI Gene 879836], CENPF (centromere protein F) [NCBI Gene 1063], pscF (type III export protein PscF) [NCBI Gene 879634], CYCSP53 (CYCS pseudogene 53) [NCBI Gene 360156]
- **Proteins:** PA3840 (SAM-dependent methyltransferase), NFKB1 (nuclear factor kappa B subunit 1)
- **Species:** Pseudomonas aeruginosa (taxon 287)

## Full-text entities

- **Diseases:** cytotoxicity (MESH:D064420), inflammation (MESH:D007249)
- **Chemicals:** PA3840 (-)
- **Species:** Pseudomonas aeruginosa (species) [taxon 287]

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12841499/full.md

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Source: https://tomesphere.com/paper/PMC12841499