# Assessment of Antibiotic Sensitivity in Biofilms Using GelMA Hydrogel Microspheres

**Authors:** Junchi Zhu, Wenqi Chen, Zhenzhi Shi, Yiming Liu, Lulu Shi, Jiafei Xi

PMC · DOI: 10.3390/gels12010085 · 2026-01-18

## TL;DR

This study introduces a new method using GelMA microspheres to test antibiotic resistance in biofilms, which are more resistant than free-floating bacteria.

## Contribution

A high-throughput method for assessing biofilm antibiotic tolerance using GelMA microspheres, revealing significantly higher resistance levels than planktonic cells.

## Key findings

- Biofilms showed antibiotic tolerance exceeding 200 μg/mL for ampicillin, 10–50 μg/mL for ciprofloxacin, and 20–50 μg/mL for ceftriaxone.
- Tolerance levels were one to two orders of magnitude higher than planktonic MICs and surpassed clinical breakpoints.
- The method is high-throughput, using hundreds of microspheres and completing within 24 hours.

## Abstract

Conventional antibiotic susceptibility testing (AST) primarily assesses planktonic bacteria. However, the three-dimensional architecture and barrier properties of biofilms mean that the minimum inhibitory concentration (MIC) for planktonic cells is typically far lower than the antibiotic exposure required for biofilm eradication. In this study, gelatin methacryloyl (GelMA) microspheres were used to create a three-dimensional biofilm microenvironment for the quantitative evaluation of biofilm tolerance. Escherichia coli K-12 MG1655 was immersed in GelMA microspheres and subjected to a series of antibiotic concentration gradients. Bacterial viability was inferred from time-dependent changes in microsphere diameter. The results demonstrated substantial tolerance of the resulting biofilms to ampicillin, ciprofloxacin, and ceftriaxone, with biofilm antibiotic tolerance values exceeding 200 μg/mL, 10–50 μg/mL, and 20–50 μg/mL, respectively. Relative to planktonic MICs, these tolerance levels are elevated by one to two orders of magnitude and surpass the standard clinical breakpoint thresholds. This methodology includes a high-throughput platform, involving only several hundred microspheres and achieving completion within 24 h, thereby offering a useful platform for investigating biofilm resistance mechanisms and guiding antibiotic treatment strategies.

## Linked entities

- **Chemicals:** ampicillin (PubChem CID 6249), ciprofloxacin (PubChem CID 2764), ceftriaxone (PubChem CID 5479530)

## Full-text entities

- **Chemicals:** GelMA Hydrogel (-), ampicillin (MESH:D000667), ceftriaxone (MESH:D002443), ciprofloxacin (MESH:D002939)
- **Species:** Escherichia coli K-12 (strain) [taxon 83333], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395]

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12840608/full.md

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Source: https://tomesphere.com/paper/PMC12840608