# HPLC/GC–MS and Electronic Sensing Reveal Tissue-Wide Differences in Bioactive and Flavor Compound Distribution in Coffee Fruits Across Multiple Varieties

**Authors:** Lu-Xia Ran, Xiao-Hua Dai, Er-Fang Ren, Jin-Hong Li, Lin Yan, Usman Rasheed, Gan-Lin Chen

PMC · DOI: 10.3390/foods15020269 · Foods · 2026-01-12

## TL;DR

This study compares bioactive compounds and flavor profiles in coffee fruits across varieties, highlighting potential uses for byproducts.

## Contribution

The study reveals distinct bioactive and flavor compound distributions in coffee tissues and varieties, emphasizing byproduct potential.

## Key findings

- DR390 and RY3 have higher levels of total phenols, caffeine, and chlorogenic acid.
- Coffee byproducts like exocarp and silverskin contain high antioxidant and bioactive potential.
- Varieties DR402 and RY3 show superior bioactive and flavor profiles compared to others.

## Abstract

The quality of different coffee varieties varies, and the corresponding bioactive value of coffee processing byproducts is often overlooked. For that, we employed HPLC, GC-MS, and electronic sensory analyses to evaluate the key bioactive components, antioxidant potential, and flavor traits of green coffee bean and coffee processing byproducts of seven coffee varieties. The results showed that green coffee beans (Oe+Ie) and exocarp (Ep) possessed strong antioxidant activity and high total phenolic content (TPC), caffeine and trigonelline content. Among the varieties, DR390 contained higher levels of total phenols, caffeine, and trigonelline, whereas DR402 was rich in caffeine and chlorogenic acid. In addition, RY3 exhibited higher TPC, total flavonoid content (TFC), caffeine, and chlorogenic acid. The parchment (Pc) layer was rich in soluble sugars (1.83–5.43%), while the silverskin (Sk) contained relatively high levels of chlorogenic acid (3.58–4.69 mg/g). Flavor analysis identified eleven classes of volatile compounds in green coffee bean (Oe+Ie) and byproducts (Ep, Pc, Sk), with esters, ketones, alcohols, and aldehydes being the most prevalent. Seven key aroma compounds, including methyl salicylate, phenethyl alcohol, nonanal, and benzaldehyde, were identified across the various structural tissues of coffee fruit. Distinct flavor profiles were observed among the coffee fruit parts: green coffee bean (Oe+Ie) was nutty; the Ep showed fruity and cocoa-like aromas; the Pc and Sk exhibited papery and nutty aromas, respectively. Varieties DR397, DR402, and RY3 exhibited pronounced aroma profiles. Comprehensive analysis showed that DR402 and RY3 had higher overall scores for bioactive and flavor components than other varieties in their groups. In summary, green coffee bean (Oe+Ie) exhibited strong antioxidant activity and high levels of bioactive compounds. Coffee byproducts, such as the Ep, hold potential for extracting natural antioxidants and bioactive compounds to develop specialty products or for other high-value utilization.

## Linked entities

- **Chemicals:** caffeine (PubChem CID 2519), trigonelline (PubChem CID 5570), chlorogenic acid (PubChem CID 1794427), methyl salicylate (PubChem CID 4133), phenethyl alcohol (PubChem CID 6054), nonanal (PubChem CID 31289), benzaldehyde (PubChem CID 240)

## Full-text entities

- **Chemicals:** sugars (MESH:D000073893), methyl salicylate (MESH:C033069), ketones (MESH:D007659), phenethyl alcohol (MESH:D010626), phenolic (-), chlorogenic acid (MESH:D002726), phenols (MESH:D010636), esters (MESH:D004952), caffeine (MESH:D002110), benzaldehyde (MESH:C032175), aldehydes (MESH:D000447), alcohols (MESH:D000438), trigonelline (MESH:C009560), Oe (MESH:C108709), flavonoid (MESH:D005419), nonanal (MESH:C008664)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12840179/full.md

## References

136 references — full list in the complete paper: https://tomesphere.com/paper/PMC12840179/full.md

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Source: https://tomesphere.com/paper/PMC12840179