# Potential Impact of Microbial Dysbiosis and Tryptophan Metabolites in Advanced Stages of Colorectal Cancer

**Authors:** Anne Hulin, Aline Rifflet, Florence Castelli, Quentin Giai Gianetto, François Fenaille, Abdel Aissat, Mariette Matondo, Soraya Fellahi, Christophe Tournigand, Christophe Junot, Philippe Sansonetti, Ivo Gomperts-Boneca, Denis Mestivier, Iradj Sobhani

PMC · DOI: 10.3390/biomedicines14010026 · Biomedicines · 2025-12-22

## TL;DR

This study explores how changes in gut microbes and tryptophan metabolites are linked to advanced colorectal cancer, suggesting potential new markers for immune response failure.

## Contribution

The study identifies a shift in tryptophan metabolism and microbial imbalances in stage IV colorectal cancer patients, offering new insights into disease progression.

## Key findings

- Stage IV CRC patients show higher urinary bile acids and altered tryptophan metabolites compared to controls.
- Increased pro-inflammatory bacteria and decreased symbiotic bacteria are associated with advanced CRC stages.
- Altered tryptophan/kynurenine metabolites may serve as markers for immune response failure in CRC.

## Abstract

Background/Objectives: We conducted an untargeted metabolomic study in serum, urine, and fecal water in colorectal cancer (CRC) patients compared to healthy controls. The aim was to define the interactions between metabolites and microbiota. Methods: Effluents were collected before colonoscopy. Metabolites were analyzed using LC-HRMS. Bioinformatics analyses included Limma test, along with spectral house and public databases for annotations. Whole-genome shotgun sequencing was performed on fecal samples. Species–metabolite interactions were calculated using Spearman correlation. Interleukins and inflammatory proteins were measured. Results: Fifty-three patients (11 stage I, 10 stage II, 10 stage III, and 22 stage IV) and twenty controls were included. Derivatives of deoxycholic acid, cholic acid, and fatty acids were lower in serum, while urinary bile acids were higher in stage IV CRC patients (versus controls). Metabolites related to tryptophan and glutamate were found significantly altered in stage IV: upregulation of kynurenine and downregulation of indole pathways. This was linked to increased inflammatory protein and microbial metabolites and to the imbalance between virulent pro-inflammatory bacteria (Escherichia and Desulfovibrio) and symbiotic (Ruminococcus and Bifidobacterium) bacteria. Conclusions: E. coli-related tryptophan catabolism shift is shown through stage IV CRC as compared to controls. As a consequence, tryptophan/kynurenine metabolite may become a promising marker for detecting the failure to immune response during therapy.

## Linked entities

- **Chemicals:** deoxycholic acid (PubChem CID 222528), cholic acid (PubChem CID 221493), fatty acids (PubChem CID 264), tryptophan (PubChem CID 1148), kynurenine (PubChem CID 846), indole (PubChem CID 798)
- **Diseases:** colorectal cancer (MONDO:0005575), CRC (MONDO:0005575)
- **Species:** Escherichia (taxon 561), Desulfovibrio (taxon 872), Ruminococcus (taxon 1263), Bifidobacterium (taxon 1678)

## Full-text entities

- **Diseases:** stage IV (MESH:D062706), Microbial Dysbiosis (MESH:D064806), CRC (MESH:D015179), inflammatory (MESH:D007249)
- **Chemicals:** glutamate (MESH:D018698), fatty acids (MESH:D005227), deoxycholic acid (MESH:D003840), kynurenine (MESH:D007737), cholic acid (MESH:D019826), Tryptophan (MESH:D014364), indole (MESH:C030374), bile acids (MESH:D001647)
- **Species:** Bifidobacterium (genus) [taxon 1678], Desulfovibrio (genus) [taxon 872], Escherichia coli (E. coli, species) [taxon 562], Homo sapiens (human, species) [taxon 9606], Ruminococcus (genus) [taxon 1263]

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12838134/full.md

## References

48 references — full list in the complete paper: https://tomesphere.com/paper/PMC12838134/full.md

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Source: https://tomesphere.com/paper/PMC12838134