# Engineering Saccharomyces cerevisiae to improve heterologous abscisic acid production

**Authors:** Maximilian Otto, Sara Muñiz-Calvo, Michael Gossing, Florian David, Verena Siewers

PMC · DOI: 10.1186/s12934-025-02913-8 · Microbial Cell Factories · 2026-01-23

## TL;DR

Researchers engineered yeast to produce more abscisic acid, a plant hormone with agricultural and medical uses, by optimizing enzyme activity and using plant proteins.

## Contribution

A novel strategy using plant proteins to enhance P450 monooxygenase activity in yeast for improved abscisic acid production.

## Key findings

- Overexpression of Arabidopsis thaliana proteins AtMSBP1 and AtCOL4 increased ABA titers by over fivefold.
- Knockout of PAH1 improved ABA production but caused growth defects, which were mitigated by promoter replacement.
- Heterologous plant proteins outperformed complex genetic modifications in ABA titer improvement.

## Abstract

Abscisic acid (ABA) is a phytohormone involved in regulating plant growth, development, and stress responses. Its various physiological activities in plants and animals make the molecule a high-value product with agricultural, medical and nutritional applications. We previously constructed an ABA cell factory by expressing the ABA metabolic pathway from Botrytis cinerea in the biotechnological workhorse Saccharomyces cerevisiae. In this study, we aimed to improve ABA production and explored various rational engineering targets mostly focusing on increasing the activity of the two cytochrome P450 monooxygenases of the ABA pathway, BcABA1 and BcABA2. We evaluated the effects of cell membrane transporters, expression of heterologous cytochrome b5, improving heme supply, altering ER homeostasis, expression of Arabidopsis thaliana proteins and improving the precursor supply.

One of the genes involved in ER membrane homeostasis, PAH1, was identified as a promising engineering target. Knock-out of PAH1 improved ABA titers but also caused a severe growth defect. By replacing the PAH1 promoter with a weak minimal promoter, it was possible to mediate the growth defect while still improving ABA production. However, we also found that, in terms of ABA titer, a strain expressing the A. thaliana genes encoding the membrane steroid binding protein 1 (AtMSBP1) and the putative transcription factor CONSTANS-like 4 protein (AtCOL4) outperformed a highly-engineered strain with two copies of bcaba1 and bcaba2, PAH1 knockdown and further genetic modifications. Solely overexpressing the two plant proteins increased ABA titers by more than fivefold.

In this report we were able to improve ABA titers and furthermore provide valuable insights for engineering other cell factories containing cytochrome P450 monooxygenases. Our results demonstrate that expressing heterologous plant proteins can be a simple yet highly effective engineering strategy to increase P450 monooxygenase activity.

The online version contains supplementary material available at 10.1186/s12934-025-02913-8.

## Linked entities

- **Genes:** pah-1 (Phenylalanine-4-hydroxylase) [NCBI Gene 174401], Bcaba1 (Bcaba1) [NCBI Gene 5434514], Bcaba2 (Bcaba2) [NCBI Gene 5434515], COL4 (zinc finger CONSTANS-like protein) [NCBI Gene 832563]
- **Proteins:** Bcaba1 (Bcaba1), Bcaba2 (Bcaba2), COL4 (zinc finger CONSTANS-like protein)
- **Chemicals:** abscisic acid (PubChem CID 30583), heme (PubChem CID 4973)
- **Species:** Saccharomyces cerevisiae (taxon 4932), Botrytis cinerea (taxon 40559), Arabidopsis thaliana (taxon 3702)

## Full-text entities

- **Genes:** HIS3 (imidazoleglycerol-phosphate dehydratase HIS3) [NCBI Gene 854377] {aka HIS10, HIS8}, GR-RBP2 (glycine-rich RNA-binding protein 2) [NCBI Gene 827019] {aka ATGRP2, F18A5.240, F18A5_240, GLYCINE-RICH RNA-BINDING PROTEIN, GLYCINE-RICH RNA-BINDING PROTEIN 2, GRP2}, OPI1 (transcriptional regulator OPI1) [NCBI Gene 856366], PDR5 (ATP-binding cassette multidrug transporter PDR5) [NCBI Gene 854324] {aka LEM1, STS1, YDR1}, REV1 (deoxycytidyl transferase) [NCBI Gene 854527], COL4 (zinc finger CONSTANS-like protein) [NCBI Gene 832563] {aka ATCOL4, B-box domain protein 5, BBX5, CONSTANS-like 4, F6A4.140, F6A4_140}, PAH1 (phosphatidate phosphatase PAH1) [NCBI Gene 855201] {aka SMP2}, PAH1 (Lipin family protein) [NCBI Gene 820113] {aka ATPAH1, PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1}, HEM13 (coproporphyrinogen oxidase) [NCBI Gene 851614], SNQ2 (ATP-binding cassette transporter SNQ2) [NCBI Gene 851574], AIM33 (cytochrome-b5 reductase) [NCBI Gene 854887], YOR1 (ATP-binding cassette transporter YOR1) [NCBI Gene 853198] {aka YRS1}, TEF1 (translation elongation factor EF-1 alpha) [NCBI Gene 856195], GCN20 (putative AAA family ATPase GCN20) [NCBI Gene 850561], INO4 (Ino4p) [NCBI Gene 854042], AFG1 (Afg1p) [NCBI Gene 856658], MSBP1 (membrane steroid binding protein 1) [NCBI Gene 835300] {aka ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 5, ATMP1, AtMAPR5, F17P19.14, F17P19_14, membrane steroid binding protein 1}, PDR15 (ATP-binding cassette multidrug transporter PDR15) [NCBI Gene 852015], RTN1 (Rtn1p) [NCBI Gene 851819], CBR1 (cytochrome-b5 reductase) [NCBI Gene 854768] {aka CBR5}, ICE2 (Ice2p) [NCBI Gene 854718], PHB1 (prohibitin subunit PHB1) [NCBI Gene 853033], CYC1 (cytochrome c isoform 1) [NCBI Gene 853507], INO2 (Ino2p) [NCBI Gene 851701] {aka DIE1, SCS1}, ERG9 (bifunctional farnesyl-diphosphate farnesyltransferase/squalene synthase) [NCBI Gene 856597], ERG20 (bifunctional (2E,6E)-farnesyl diphosphate synthase/dimethylallyltranstransferase) [NCBI Gene 853272] {aka BOT3, FDS1, FPP1}, LPP1 (phosphatidate phosphatase LPP1) [NCBI Gene 852114], GRP7 (cold, circadian rhythm, and rna binding 2) [NCBI Gene 816705] {aka ''cold, ATGPR7, ATGRP7, CCR2, F2G1.4, GLYCINE RICH PROTEIN 7}, VMA2 (H(+)-transporting V1 sector ATPase subunit B) [NCBI Gene 852424] {aka VAT2}, PDR10 (ATP-binding cassette multidrug transporter PDR10) [NCBI Gene 854506], DPP1 (bifunctional diacylglycerol diphosphate phosphatase/phosphatidate phosphatase) [NCBI Gene 851878] {aka ZRG1}, PDR1 (drug-responsive transcription factor PDR1) [NCBI Gene 852871] {aka AMY1, ANT1, BOR2, CYH3, NRA2, SMR2}, HHF2 (histone H4) [NCBI Gene 855701], IRE1 (bifunctional endoribonuclease/protein kinase IRE1) [NCBI Gene 856478] {aka ERN1}, CYB5 (Cyb5p) [NCBI Gene 855612], TEF2 (translation elongation factor EF-1 alpha) [NCBI Gene 852415], YRR1 (Yrr1p) [NCBI Gene 854333] {aka PDR2}, HMX1 (Hmx1p) [NCBI Gene 850902]
- **Diseases:** inflammatory diseases (MESH:D007249), malaria (MESH:D008288), metabolic syndrome (MESH:D024821), growth deficiency (MESH:D006130), type-2-diabetes (MESH:D003924), respiratory deficiencies (MESH:D012131), infections (MESH:D007239)
- **Chemicals:** NADPH (MESH:D009249), water (MESH:D014867), histidine (MESH:D006639), ethyl acetate (MESH:C007650), fluconazole (MESH:D015725), heme (MESH:D006418), PL (MESH:D010743), flavonoid (MESH:D005419), FPP (MESH:C004808), agar (MESH:D000362), MVA (MESH:D008798), oxygen (MESH:D010100), isoprenoid (MESH:D013729), betaxanthin (MESH:C488995), farnesol (MESH:D005204), lignin (MESH:D008031), farnesene (MESH:D012717), acetonitrile (MESH:C032159), CYB5s (-), artemisinic acid (MESH:C047721), uracil (MESH:D014498), formic acid (MESH:C030544), (+)-ABA (MESH:D000040), methanol (MESH:D000432), glucose (MESH:D005947), lipid (MESH:D008055)
- **Species:** Vitreoscilla stercoraria (species) [taxon 61], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Escherichia coli (E. coli, species) [taxon 562], Botrytis cinerea (gray fruit mold, species) [taxon 40559], Yarrowia lipolytica (species) [taxon 4952], Gypsophila vaccaria (bladder-soapwort, species) [taxon 39387], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702]
- **Mutations:** L119A
- **Cell lines:** -11C — Homo sapiens (Human), Down syndrome, Induced pluripotent stem cell (CVCL_ZA03), yMO26 — Rattus norvegicus (Rat), Transformed cell line (CVCL_8806), -5D — Bos taurus (Bovine), Hybrid cell line (CVCL_9256), yMO35 — Rattus norvegicus (Rat), Rat malignant glioma, Cancer cell line (CVCL_4630)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12836960/full.md

## References

14 references — full list in the complete paper: https://tomesphere.com/paper/PMC12836960/full.md

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Source: https://tomesphere.com/paper/PMC12836960