# KDM3A drives NSCLC proliferation and metastasis via H3K9 demethylation, EMT activation, and MMP-9 upregulation

**Authors:** Bingqing Shi, Zhe Wang, Lei Xiu, Luyao Li, Xiaolian Yang, Guanhua Wang, Jianjun Li, Hu Wang, Yuning Han

PMC · DOI: 10.17305/bb.2025.11251 · Biomolecules and Biomedicine · 2025-11-03

## TL;DR

This study shows that KDM3A promotes lung cancer growth and spread by altering histone methylation and activating cancer-related pathways.

## Contribution

The novel finding is that KDM3A drives NSCLC progression via H3K9 demethylation, EMT activation, and MMP-9 upregulation.

## Key findings

- KDM3A knockdown reduces H3K9me2, suppresses proliferation, and inhibits EMT and MMP-9 expression.
- KDM3A overexpression enhances metastasis by upregulating VIM and MMP-9 through H3K9me2 reduction.
- KDM3A activates p-STAT3 to downregulate E-cadherin and correlates with metastatic NSCLC tissues.

## Abstract

Histone methylation dysregulation is a crucial epigenetic driver of lung carcinogenesis; however, the role of lysine-specific demethylase 3A (KDM3A) in non-small cell lung cancer (NSCLC) remains inadequately understood. In this study, we established NSCLC cell models with both KDM3A overexpression and knockdown to investigate its functional impact. In vitro assays demonstrated that KDM3A depletion increased histone H3 lysine 9 dimethylation (H3K9me2), suppressed cell proliferation, and impaired migration and invasion by attenuating epithelial–mesenchymal transition (EMT) and the expression of matrix metalloproteinase-9 (MMP-9). Conversely, KDM3A overexpression led to reduced H3K9me2 levels, activated EMT, and enhanced metastatic potential. Mechanistically, KDM3A decreased H3K9me2 occupancy at the promoters of VIM and MMP-9, thus upregulating their expression. Additionally, KDM3A downregulated E-cadherin by activating the p-STAT3 pathway. In vivo, KDM3A knockdown significantly inhibited tumor growth in xenograft models. Clinical analyses revealed elevated KDM3A expression in metastatic NSCLC tissues, with a negative correlation between KDM3A and H3K9me2, and a positive association between KDM3A and FOXP3. These findings establish KDM3A as an epigenetic modulator of NSCLC progression through H3K9me2-dependent regulation of EMT and metastatic pathways, highlighting its therapeutic potential for NSCLC treatment.

## Linked entities

- **Genes:** KDM3A (lysine demethylase 3A) [NCBI Gene 55818], VIM (vimentin) [NCBI Gene 7431], MMP9 (matrix metallopeptidase 9) [NCBI Gene 4318], shg (shotgun) [NCBI Gene 37386], FOXP3 (forkhead box P3) [NCBI Gene 50943]
- **Proteins:** KDM3A (lysine demethylase 3A)
- **Diseases:** non-small cell lung cancer (MONDO:0005233), NSCLC (MONDO:0005233)

## Full-text entities

- **Genes:** KDM3A (lysine demethylase 3A) [NCBI Gene 55818] {aka JHDM2A, JHMD2A, JMJD1, JMJD1A, TSGA}, MMP9 (matrix metallopeptidase 9) [NCBI Gene 4318] {aka CLG4B, GELB, MANDP2, MMP-9}, STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, CDH1 (cadherin 1) [NCBI Gene 999] {aka Arc-1, BCDS1, CD324, CDHE, ECAD, LCAM}, FOXP3 (forkhead box P3) [NCBI Gene 50943] {aka AIID, DIETER, IPEX, JM2, PIDX, XPID}, VIM (vimentin) [NCBI Gene 7431]
- **Diseases:** lung carcinogenesis (MESH:D063646), NSCLC (MESH:D002289), tumor (MESH:D009369), metastasis (MESH:D009362)

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12834307/full.md

## References

52 references — full list in the complete paper: https://tomesphere.com/paper/PMC12834307/full.md

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Source: https://tomesphere.com/paper/PMC12834307