# Gut microbiota in early and established stages of rheumatoid arthritis: from pathogenesis to promising prevention and treatment

**Authors:** Shuanglan Chen, Minh Hung Hoang, Dongsen Hu, Qingman He, Yongxiang Gao

PMC · DOI: 10.1080/07853890.2026.2613484 · Annals of Medicine · 2026-01-23

## TL;DR

This paper reviews how gut microbiota influences early rheumatoid arthritis development and offers new treatment and prevention strategies.

## Contribution

The paper emphasizes the gut microbiota's role in early RA pathogenesis and its potential as a therapeutic target.

## Key findings

- Gut microbiota influences RA onset through immune modulation and intestinal permeability.
- Microbiota-targeted interventions like probiotics and diet show promise for RA prevention and treatment.
- The gut microbiota is a critical driver in early RA pathogenesis, not just in established disease.

## Abstract

Background: Rheumatoid arthritis (RA) is a chronic autoimmune inflammatory disease whose etiology is not fully understood. Before overt disease, genetically prone individuals may undergo a lengthy pre-clinical phase during which loss of tolerance triggers autoantibody emergence. The gut–joint axis was proposed decades ago, and mounting evidence now suggests that alterations in the gut microbiome may matter most in early, rather than established, RA.Results: By modulating intestinal permeability, mucosal and systemic immunity, genetic-risk pathways, molecular mimicry, and microbial metabolites, the gut microbiota plays a pivotal role in the onset and progression of RA. The window of opportunity for RA therapy may lie before joint inflammation becomes evident, and microbiota-targeted interventions are emerging. Probiotics, dietary interventions, and natural compounds hold promise as potential strategies for both RA prevention and adjunctive therapy after onset.Conclusions: This review highlights the gut microbiota not merely as a modulator of established RA, but – more critically – as a driver of early disease pathogenesis and a promising therapeutic target, thereby providing new insights for managing pre-clinical RA and refining treatment of established RA.

## Linked entities

- **Diseases:** rheumatoid arthritis (MONDO:0008383), RA (MONDO:0005272)

## Full-text entities

- **Genes:** IL17A (interleukin 17A) [NCBI Gene 3605] {aka CTLA-8, CTLA8, IL-17, IL-17A, IL17, ILA17}, TJP1 (tight junction protein 1) [NCBI Gene 7082] {aka ZO-1}, Tnfaip3 (tumor necrosis factor, alpha-induced protein 3) [NCBI Gene 21929] {aka A20, Tnfip3}, EPAS1 (endothelial PAS domain protein 1) [NCBI Gene 2034] {aka ECYT4, HIF2A, HLF, MOP2, PASD2, bHLHe73}, Padi4 (peptidyl arginine deiminase, type IV) [NCBI Gene 18602] {aka Pad4, Pdi4}, Ptpn22 (protein tyrosine phosphatase, non-receptor type 22 (lymphoid)) [NCBI Gene 19260] {aka 70zpep, PEP, Ptpn8}, Crp (C-reactive protein, pentraxin-related) [NCBI Gene 12944], Il10 (interleukin 10) [NCBI Gene 16153] {aka CSIF, If2a, Il-10}, Bcl6 (B cell leukemia/lymphoma 6) [NCBI Gene 12053] {aka Bcl5}, Il17a (interleukin 17A) [NCBI Gene 16171] {aka Ctla-8, Ctla8, IL-17, IL-17A, Il17}, Ighv1-9 (immunoglobulin heavy variable 1-9) [NCBI Gene 668478] {aka Gm16697, Igg2a}, Rpl23a (ribosomal protein L23A) [NCBI Gene 268449] {aka MDA20}, Il6 (interleukin 6) [NCBI Gene 16193] {aka Il-6}, Gns (glucosamine (N-acetyl)-6-sulfatase) [NCBI Gene 75612] {aka 2610016K11Rik, G6S}, IL21 (interleukin 21) [NCBI Gene 59067] {aka CVID11, IL-21, Za11}, IL2 (interleukin 2) [NCBI Gene 3558] {aka IL-2, TCGF, lymphokine}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, Ahr (aryl-hydrocarbon receptor) [NCBI Gene 11622] {aka Ah, Ahh, Ahre, In, bHLHe76}, Tjp1 (tight junction protein 1) [NCBI Gene 21872] {aka ZO1}, Ffar2 (free fatty acid receptor 2) [NCBI Gene 233079] {aka GPCR43, Gpr43}, Il4 (interleukin 4) [NCBI Gene 16189] {aka BSF-1, Il-4}, Igha (immunoglobulin heavy constant alpha) [NCBI Gene 238447] {aka IgA, Igh-2}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, Flna (filamin, alpha) [NCBI Gene 192176] {aka ABP-280, Dilp2, F730004A14Rik, Fln1, GENA 379, filamin-1}, HP (haptoglobin) [NCBI Gene 3240] {aka HP2ALPHA2, HPA1S}, IL4 (interleukin 4) [NCBI Gene 3565] {aka BCGF-1, BCGF1, BSF-1, BSF1, IL-4}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, Ifng (interferon gamma) [NCBI Gene 15978] {aka IFN-g, If2f, Ifg}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, Itgae (integrin alpha E, epithelial-associated) [NCBI Gene 16407] {aka A530055J10, CD103, aM290, alpha-E1, alpha-M290}, CLDN15 (claudin 15) [NCBI Gene 24146], Hp (haptoglobin) [NCBI Gene 15439] {aka HP-1, preHP2}, Sftpb (surfactant associated protein B) [NCBI Gene 20388] {aka SF-B, SP-B, Sftp-3, Sftp3}
- **Diseases:** mitochondrial dysfunction (MESH:D028361), autoimmune (MESH:D001327), immune dysregulation (OMIM:614878), joint destruction (MESH:D008105), colitis (MESH:D003092), bone erosion (MESH:D014077), joint pain (MESH:D018771), NORA (MESH:D001172), -induced (MESH:D000092582), toxicity (MESH:D064420), synovitis (MESH:D013585), microbial (MESH:D015163), of intestinal (MESH:D007410), bone destruction (MESH:D001847), gastrointestinal disorders (MESH:D005767), B-cell (MESH:D015448), hypoxia (MESH:D000860), morning stiffness (MESH:D048968), gut dysbiosis (MESH:D064806), cardiovascular adverse events (MESH:D002318), joint damage (MESH:D007592), arthritic (MESH:D015535), GC (MESH:C548085), immune-mediated disorders (MESH:C567355), arthritis (MESH:D001168), oral diseases (MESH:D009059), pain (MESH:D010146), necrosis (MESH:D009336), spondyloarthritis (MESH:D013167), inflammation (MESH:D007249), ACPAs (MESH:D007153), AIA (MESH:D001169)
- **Chemicals:** glutamate (MESH:D018698), Inulin (MESH:D007444), lipid (MESH:D008055), Butyrate (MESH:D002087), aromatic amino acids (MESH:D024322), prednisolone (MESH:D011239), olive oil (MESH:D000069463), tryptophan (MESH:D014364), amino acid (MESH:D000596), valerate (MESH:D014631), Magnesium (MESH:D008274), propionate (MESH:D011422), Sinomenine (MESH:C009271), zymosan (MESH:D015054), indole (MESH:C030374), BxN (-), nitrate (MESH:D009566), natrium (MESH:D012964), SCFA (MESH:D005232), fat (MESH:D005223), acetate (MESH:D000085), AT-1002 (MESH:C530561), caproate (MESH:C037652), Prebiotics (MESH:D056692), glycochenodeoxycholic acid (MESH:D005999), amylose (MESH:D000688), K (MESH:D011188), simple sugars (MESH:D009005), ATP (MESH:D000255), Succinate (MESH:D019802), isobutyrate (MESH:D058610), starch (MESH:D013213), L-arginine (MESH:D001120), lysophospholipids (MESH:D008246), glycocholic acids (MESH:D006000), BBR (MESH:D001599), MTX (MESH:D008727), Bile acids (MESH:D001647), luminal (MESH:D010634), alcohol (MESH:D000438)
- **Species:** Streptococcus sanguinis (species) [taxon 1305], Collinsella (genus) [taxon 102106], Shigella (genus) [taxon 620], Clematis manshurica Rupr [taxon 1634002], Eggerthella (genus) [taxon 84111], Spirulina (suborder) [taxon 551299], Desulfovibrionales (order) [taxon 213115], Lacticaseibacillus casei (species) [taxon 1582], Prevotella histicola (species) [taxon 470565], Prevotella (genus) [taxon 838], Bifidobacterium adolescentis (species) [taxon 1680], Paeonia lactiflora (Chinese peony, species) [taxon 35924], Bifidobacterium bifidum (species) [taxon 1681], Rattus norvegicus (brown rat, species) [taxon 10116], Rikenella (genus) [taxon 28138], Bifidobacterium longum (species) [taxon 216816], Mus musculus (house mouse, species) [taxon 10090], Clostridium (genus) [taxon 1485], Lactobacillus helveticus (species) [taxon 1587], Candida albicans (species) [taxon 5476], Bacteroides (genus) [taxon 816], Ruminococcus (genus) [taxon 1263], Homo sapiens (human, species) [taxon 9606], Latilactobacillus sakei (species) [taxon 1599], Citrobacter (genus) [taxon 544], Parabacteroides distasonis (species) [taxon 823], gut metagenome (species) [taxon 749906], Lactobacillus acidophilus (species) [taxon 1579], Segatella copri (species) [taxon 165179]
- **Cell lines:** Caco-2 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0025)

## Full text

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## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12833903/full.md

## References

149 references — full list in the complete paper: https://tomesphere.com/paper/PMC12833903/full.md

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Source: https://tomesphere.com/paper/PMC12833903