# Discovery of a First-in-Class Covalent Allosteric SHP1 Inhibitor with Immunotherapeutic Activity

**Authors:** Zihan Qu, Frederick Nguele Meke, Zheng Zhang, Aaron D. Krabill, Christine S. Muli, Brenson A. Jassim, Jiajun Dong, Quyen D. Nguyen, Yunpeng Bai, Jinyue Li, Yiming Miao, Bardia Asadi, Levi M. Johnson, Jinmin Miao, Darci J. Trader, W. Andy Tao, Zhong-Yin Zhang

PMC · DOI: 10.1002/anie.202525126 · Angewandte Chemie (International ed. in English) · 2026-01-27

## TL;DR

Scientists discovered a new drug that inhibits SHP1, a protein involved in immune signals, and it shows promise in fighting cancer by boosting immune cell activity.

## Contribution

A first-in-class covalent allosteric SHP1 inhibitor was developed, targeting a novel cysteine residue and demonstrating antitumor activity.

## Key findings

- M029 covalently binds to Cys480 of SHP1, an allosteric site distant from the active site.
- M029 is orally active and inhibits tumor progression by activating natural killer cells and CD8+ T cells.
- M029 shows high selectivity for SHP1 and reduces T cell exhaustion in a cancer model.

## Abstract

Src homology 2 domain-containing phosphatase 1 (SHP1), encoded by PTPN6, is a key intracellular mediator of inhibitory immune signals. SHP1 is garnering attention as a potential immunotherapeutic target since SHP1 deletion elicits strong antitumor activity by boosting both innate and adaptive immunity. Unfortunately, no quality SHP1 inhibitor exists to demonstrate its translatability owing to the challenges posed by the chemistry of the phosphatase active site. Herein, we describe the discovery of a first-in-class, phenyl chloroacetamide-based covalent allosteric SHP1 inhibitor M029 through covalent fragment screening and multiparameter optimization. M029 inactivates SHP1 by covalently binding to a non-conserved and cryptic Cys480 far away from the active site, thus uncovering a novel allosteric mechanism for SHP1 inhibition. In addition, M029 is highly selective for SHP1 and exhibits robust cellular target engagement. Importantly, M029 is orally active and blocks tumor progression in a syngeneic cancer model by activating natural killer cells and cytotoxic CD8+ T cells, along with reduced T cell exhaustion. Together, this study reveals a ligandable Cys that can be exploited for allosteric inhibition of SHP1, which has been refractory to targeted pharmacologic manipulation. The work also demonstrates small-molecule SHP1 inhibition as a compelling approach for new cancer immunotherapy.

## Linked entities

- **Genes:** PTPN6 (protein tyrosine phosphatase non-receptor type 6) [NCBI Gene 5777]
- **Proteins:** PTPN6 (protein tyrosine phosphatase non-receptor type 6), CD8A (CD8 subunit alpha)
- **Chemicals:** M029 (PubChem CID 177865741), phenyl chloroacetamide (PubChem CID 344971)

## Full-text entities

- **Genes:** CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, PTPN6 (protein tyrosine phosphatase non-receptor type 6) [NCBI Gene 5777] {aka HCP, HCPH, HPTP1C, PTP-1C, SH-PTP1, SHP-1}
- **Diseases:** cancer (MESH:D009369)
- **Chemicals:** M029 (-), Cys (MESH:D003545)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12833730/full.md

## References

98 references — full list in the complete paper: https://tomesphere.com/paper/PMC12833730/full.md

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Source: https://tomesphere.com/paper/PMC12833730