# Histone modifications and depression: epigenetic mechanisms, therapeutic targets, and translational outlook

**Authors:** Liang-Zhen Lv, Zhao-Di Wang, Jia-jie Ren, Lu-Hao Li, Xian-bao Liu, Jia-li Li, Hui Zhu, Bei Jiang, Ya-peng Han, Xue-ming Zhou, Li Ren, Zhuo Chang

PMC · DOI: 10.3389/fgene.2025.1722453 · Frontiers in Genetics · 2026-01-12

## TL;DR

This paper explores how changes in histone modifications may contribute to depression and how targeting these changes could lead to new treatments.

## Contribution

The paper reviews epigenetic mechanisms involving histone modifications in depression and evaluates their therapeutic potential.

## Key findings

- Dysregulated histone deacetylases and methyltransferases are linked to neuroplasticity and HPA axis issues in depression.
- HDAC and HMT inhibitors show therapeutic potential beyond transcriptional effects.
- Peripheral epigenetic biomarkers could aid in patient stratification and treatment prediction.

## Abstract

Major depressive disorder (MDD) is a highly prevalent and heterogeneous psychiatric disorder shaped by the interplay of genetic, environmental, and epigenetic factors. Histone modifications, particularly acetylation and methylation, have emerged as critical regulators of chromatin dynamics and gene expression in stress adaptation, neuroplasticity, and emotional regulation. This review synthesizes current evidence linking dysregulated histone deacetylases (HDACs) and histone methyltransferases (HMTs) to impaired neuroplasticity, neuroinflammation, mitochondrial dysfunction, and hypothalamic–pituitary–adrenal (HPA) axis hyperactivity in depression. We further evaluate the therapeutic potential of HDAC and HMT inhibitors, highlight their effects beyond transcriptional control, and discuss peripheral epigenetic biomarkers as candidate tools for patient stratification and treatment prediction. Emerging technologies, including single-cell and spatial epigenomics as well as CRISPR-based epigenetic editing, are outlined as future avenues toward precision medicine. While isoform specificity, off-target effects, and translational heterogeneity remain major challenges, targeting histone modifications represents a promising strategy for next-generation antidepressant development.

## Linked entities

- **Diseases:** Major depressive disorder (MONDO:0002009), depression (MONDO:0002050)

## Full-text entities

- **Genes:** HDAC9 (histone deacetylase 9) [NCBI Gene 9734] {aka HD7, HD7b, HD9, HDAC, HDAC7B, HDAC9B}, HNMT (histamine N-methyltransferase) [NCBI Gene 3176] {aka HMT, HNMT-S1, HNMT-S2, MRT51}
- **Diseases:** depression (MESH:D003866), mitochondrial dysfunction (MESH:D028361), hypothalamic-pituitary-adrenal (HPA) axis hyperactivity (MESH:D007029), psychiatric disorder (MESH:D001523), neuroinflammation (MESH:D000090862), MDD (MESH:D003865)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12832117/full.md

## References

148 references — full list in the complete paper: https://tomesphere.com/paper/PMC12832117/full.md

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Source: https://tomesphere.com/paper/PMC12832117