# PTEN Deletions Are Associated With Tumor Progression But Unrelated to Patient Prognosis in Muscle‐Invasive Urothelial Bladder Carcinomas: A Large Multi‐Center Validation Study on 2710 Urothelial Bladder Carcinomas

**Authors:** Martina Kluth, Henning Plage, Kira Furlano, Sebastian Hofbauer, Sarah Weinberger, Annika Fendler, Bernhard Ralla, Simon Schallenberg, Sefer Elezkurtaj, Maximilian Lennartz, Andreas H. Marx, Henrik Samtleben, Margit Fisch, Michael Rink, Marcin Slojewski, Krystian Kaczmarek, Thorsten Ecke, Nico Adamini, Joachim Weischenfeldt, Henrik Zecha, Ronald Simon, Guido Sauter, Thorsten Schlomm, David Horst, Sarah Minner

PMC · DOI: 10.1002/gcc.70105 · Genes, Chromosomes & Cancer · 2026-01-24

## TL;DR

This study shows that PTEN deletions increase with bladder cancer severity but do not affect patient outcomes in advanced stages.

## Contribution

The study provides a large multi-center validation of PTEN deletion patterns in bladder cancer progression.

## Key findings

- PTEN deletions increase significantly with tumor grade progression in non-invasive bladder carcinomas.
- PTEN deletions are not linked to prognosis in muscle-invasive bladder cancers.
- PTEN deletions correlate with p53 alterations and p16 overexpression.

## Abstract

The tumor suppressor gene PTEN plays an important role in many cancer types. Mechanism of PTEN inactivation includes gene mutations and deletions. In this large multi‐center study, we analyzed the impact of PTEN deletions on tumor aggressiveness, patient prognosis, and p53 and p16 alterations, especially in muscle‐invasive urothelial bladder carcinomas to expand the results from our previous study on 686 pTa to pT4 urothelial bladder carcinomas. The PTEN copy number status was analyzed by fluorescence in situ hybridization (FISH) on more than 2700 urothelial bladder carcinomas in a tissue microarray format. PTEN deletion data were compared with clinico‐pathological parameters in pTa and pT2‐4 carcinomas and clinical outcomes in pT2‐4 carcinomas, immunohistochemical p16 and p53 expression, and TP53 copy number status measured by FISH from previous studies. PTEN deletions occurred in 18.8% of 1854 analyzable carcinomas, including 17.6% heterozygous and 1.2% homozygous deleted tumors. The PTEN deletion rate increased markedly from pTaG2 low‐grade (3.1%), to pTaG2 high‐grade (4.5%) and pTaG3 (20.7%, p < 0.0001) carcinomas, and was 23.8% in pT2‐4 carcinomas (p < 0.0001 for pTa vs. pT2‐4). In pT2‐4 cancers, PTEN deletions were unrelated to histopathological parameters of tumor aggressiveness and patient outcome. PTEN deletions were significantly associated with parameters of p53 alterations and p16 overexpression. It is concluded that PTEN deletions accumulate with grade progression in non‐invasive urothelial carcinomas of the urinary bladder. The absence of a prognostic role of PTEN deletions in pT2‐4 urothelial carcinomas is in line with our notorious inability to predict the clinical course of these tumors by only one morphological or molecular feature.

## Linked entities

- **Genes:** PTEN (phosphatase and tensin homolog) [NCBI Gene 5728], TP53 (tumor protein p53) [NCBI Gene 7157], TP53 (tumor protein p53) [NCBI Gene 7157], CDKN2A (cyclin dependent kinase inhibitor 2A) [NCBI Gene 1029]

## Full-text entities

- **Genes:** PTEN (phosphatase and tensin homolog) [NCBI Gene 5728] {aka 10q23del, BZS, CWS1, DEC, GLM2, MHAM}, ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064] {aka CD340, HER-2, HER-2/neu, HER2, MLN 19, MLN-19}, CTLA4 (cytotoxic T-lymphocyte associated protein 4) [NCBI Gene 1493] {aka ALPS5, CD, CD152, CELIAC3, CTLA-4, GRD4}, PIK3R1 (phosphoinositide-3-kinase regulatory subunit 1) [NCBI Gene 5295] {aka AGM7, GRB1, IMD36, p85, p85-ALPHA, p85alpha}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, CDKN2A (cyclin dependent kinase inhibitor 2A) [NCBI Gene 1029] {aka ARF, CAI2, CDK4I, CDKN2, CMM2, INK4}, SPATA2 (spermatogenesis associated 2) [NCBI Gene 9825] {aka PD1, PPP1R145, tamo}, PIK3CG (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma) [NCBI Gene 5294] {aka IMD97, PI3CG, PI3K, PI3Kgamma, PIK3, p110gamma}, COL11A2 (collagen type XI alpha 2 chain) [NCBI Gene 1302] {aka DFNA13, DFNB53, FBCG2, HKE5, OSMEDA, OSMEDB}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, HSP90AA1 (heat shock protein 90 alpha family class A member 1) [NCBI Gene 3320] {aka EL52, HEL-S-65p, HSP86, HSP89A, HSP90A, HSP90N}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, GATA3 (GATA binding protein 3) [NCBI Gene 2625] {aka HDR, HDRS}
- **Diseases:** TMA (MESH:D017695), genitourinary carcinomas (MESH:D014565), venous invasion (MESH:D009361), Urothelial Carcinomas (MESH:D014523), Tumor (MESH:D009369), Urothelial Bladder Carcinomas (MESH:D001749), aneuploidy (MESH:D000782), muscle-invasive cancers (MESH:D019042), metastasis (MESH:D009362), death (MESH:D003643), disease (MESH:D004194), Muscle-Invasive Urothelial Bladder Carcinomas (MESH:D000093284), prostate, kidney, breast, and lung cancer (MESH:D001943), pT2-4 (MESH:D053632), pT2-4 carcinomas (MESH:C535697)
- **Chemicals:** AZD6482 (MESH:C578518), formalin (MESH:D005557), 17-AAG (MESH:C112765), ipatasertib (MESH:C583616), Biozol (-), xylol (MESH:D014992), phosphatidylinositol (3,4,5)-trisphosphate (MESH:C060974), MK-2206 (MESH:C548887), 4',6-diamino-2-phenylindole (MESH:C000607851), paraffin (MESH:D010232), water (MESH:D014867), temsirolimus (MESH:C401859), alcohol (MESH:D000438)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

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## References

56 references — full list in the complete paper: https://tomesphere.com/paper/PMC12831224/full.md

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Source: https://tomesphere.com/paper/PMC12831224