# Alterations in Mitochondrial DNA in Corneal Fibroblast and Myofibroblast Post Injury

**Authors:** Nishant R. Sinha, Alexandria C. Hofmann, Laila A. Suleiman, Maxwell T. Jeffrey, Rajnish Kumar, Rajiv R. Mohan

PMC · DOI: 10.1167/iovs.67.1.36 · Investigative Ophthalmology & Visual Science · 2026-01-16

## TL;DR

This study explores how mitochondrial DNA changes during corneal fibroblast transformation into myofibroblasts after injury.

## Contribution

The study reveals a novel role for mitochondrial DNA and TFAM in corneal fibrosis and myofibroblast transdifferentiation.

## Key findings

- Human corneal myofibroblasts have significantly reduced mtDNA copies and mtDNA-to-nDNA ratios compared to fibroblasts.
- TFAM silencing reduces fibrotic events and increases mtDNA levels in corneal cells.
- Nitrogen mustard-induced corneal fibrosis is associated with decreased TFAM and increased αSMA.

## Abstract

Mitochondria regulate cellular activity in a tissue-selective manner. The role of mitochondria in corneal fibrosis is elusive. This study investigated changes in mitochondrial DNA (mtDNA) and mitochondrial transcription factor A (TFAM) in human corneal stromal fibroblasts (CSFs) and corneal myofibroblast (CMFs) and effects on corneal fibrosis in vitro and ex vivo.

Healthy donor human corneas were used to generate CSFs and ex vivo culture. CMF formation was induced by transforming growth factor beta-1 (TGFβ1) in vitro and human cornea by nitrogen mustard (NM) ex vivo. mtTFA/TFAM CRISPR/Cas9 KO plasmid, Lipofectamine CRISPRMAX, and TrueCut Cas9 Protein v2 were used for gene editing. Long-range PCR and quantitative reverse-transcription PCR (qRT-PCR) measured mtDNA transcription, mtDNA quantity, and ratios of mtDNA to nuclear DNA (nDNA). Immunofluorescence and immunoblotting quantified protein expression. The MitoSOX assay was used to analyze mitochondrial reactive oxygen species (mtROS).

Human CMFs showed significantly reduced mtDNA copies (P < 0.01) and mtDNA-to-nDNA ratios (P < 0.05) compared to CSFs. Significant time-dependent increases in mRNA levels of α-smooth muscle actin (αSMA) and nDNA-transcribed genes and decreases in TFAM and mtDNA-transcribed genes were noted during CSF transdifferentiation to CMFs (P < 0.05, P < 0.001, or P < 0.0001). Correspondingly, time-dependent decreases in TFAM and increases in Rieske iron–sulfur (Fe-S) and αSMA protein (P < 0.0001) and mtROS and ROS levels (P < 0.0001) were observed. TFAM silencing arrested fibrotic events and exhibited reduced αSMA and enhanced mtDNA (P < 0.001). The NM-induced fibrotic human cornea showed decreased TFAM and increased αSMA compared to naïve corneas (P < 0.01).

We observed that mtDNA plays an important role in corneal fibroblast transdifferentiation to myofibroblast and that TFAM has the potential to modulate this process in an injured cornea. Additional studies are warranted.

## Linked entities

- **Genes:** TFAM (transcription factor A, mitochondrial) [NCBI Gene 7019]
- **Proteins:** ACTA1 (actin alpha 1, skeletal muscle)
- **Chemicals:** nitrogen mustard (PubChem CID 4033)
- **Species:** Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** PTK2B (protein tyrosine kinase 2 beta) [NCBI Gene 2185] {aka CADTK, CAKB, FADK2, FAK2, PKB, PTK}, POLG (DNA polymerase gamma, catalytic subunit) [NCBI Gene 5428] {aka MIRAS, MTDPS4A, MTDPS4B, PEO, POLG1, POLGA}, ND6 (NADH dehydrogenase subunit 6) [NCBI Gene 4541] {aka MTND6}, TFAM (transcription factor A, mitochondrial) [NCBI Gene 7019] {aka MTDPS15, MTTF1, MTTFA, TCF6, TCF6L1, TCF6L2}, ND1 (NADH dehydrogenase subunit 1) [NCBI Gene 4535] {aka MTND1}, POLRMT (RNA polymerase mitochondrial) [NCBI Gene 5442] {aka APOLMT, COXPD55, MTRNAP, MTRPOL, h-mtRPOL}, COX1 (cytochrome c oxidase subunit I) [NCBI Gene 4512] {aka COI, MTCO1}, ACTA1 (actin alpha 1, skeletal muscle) [NCBI Gene 58] {aka ACTA, ASMA, CFTD, CFTD1, CFTDM, CMYO2A}, POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, Ighv1-9 (immunoglobulin heavy variable 1-9) [NCBI Gene 668478] {aka Gm16697, Igg2a}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, CSF2 (colony stimulating factor 2) [NCBI Gene 1437] {aka CSF, GMCSF}
- **Diseases:** trauma (MESH:D014947), KSS (MESH:D007625), Leber hereditary optic neuropathy (MESH:D029242), corneal opacity (MESH:D003318), CPEO (MESH:D017246), inflammatory (MESH:D007249), CMFs (MESH:D003316), keratoconus (MESH:D007640), Fuchs dystrophy (MESH:D005642), retinal pigmentary dystrophy (MESH:D058499), ocular degenerative diseases (MESH:D019636), vision impairment (MESH:D014786), mitochondrial defects (MESH:C565376), mitochondrial dysfunction (MESH:D028361), infection (MESH:D007239), corneal dystrophies (MESH:D003317), NM (MESH:D007222), ocular diseases (MESH:D005128), cornea fibrosis (MESH:D005355)
- **Chemicals:** ROS (MESH:D017382), ATP (MESH:D000255), MitoSOX (MESH:C521281), DMSO (MESH:D004121), PFA (MESH:C003043), Bis-Tris (MESH:C026272), PBS (MESH:D007854), CO2 (MESH:D002245), ethidium (MESH:D004996), agarose (MESH:D012685), 4',6-diamidino-2-phenylindole (MESH:C007293), Superoxide (MESH:D013481), calcium (MESH:D002118), Alexa Fluor 488 (MESH:C000711379), puromycin (MESH:D011691), NM (MESH:D008466), Fe-S (MESH:D007501), Gibco Antibiotic (-)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Oryctolagus cuniculus (domestic rabbit, species) [taxon 9986], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** F553L, A to H, (A) at 24, C) at 24

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12831148/full.md

## References

52 references — full list in the complete paper: https://tomesphere.com/paper/PMC12831148/full.md

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Source: https://tomesphere.com/paper/PMC12831148