# NatA engages in multi-factor complexes at the ribosomal polypeptide tunnel exit

**Authors:** Marius Klein, Klemens Wild, Nina McTiernan, Thomas Arnesen, Irmgard Sinning

PMC · DOI: 10.1038/s41467-026-68787-5 · Nature Communications · 2026-01-23

## TL;DR

This paper shows that the NatA enzyme forms multi-protein complexes at the ribosome, helping to coordinate protein modifications during their creation.

## Contribution

The study reveals that NatA acts as an interaction hub, forming diverse multi-factor complexes at the ribosomal tunnel exit.

## Key findings

- NatA can form ribosome-independent assemblies with ribosome-associated factors (RAFs).
- NatA forms a ternary complex with Ebp1 or a second copy of NatA at the ribosome.
- A conserved binding site on NatA allows interactions with four RAFs, enabling diverse complex formation.

## Abstract

N-terminal acetylation (NTA) is the most common protein modification in eukaryotes, playing a crucial role in proteostasis. Almost 40% of the human proteome is acetylated co-translationally by the NatA complex, which requires prior N-terminal methionine excision (NME). Recently, NatA was shown to form multi-enzyme complexes with MAP1/NAC or MAP2, combining the capabilities of NME and NTA into a single complex. Here, we show that NatA can also form ribosome-independent assemblies with several ribosome associated factors (RAFs). At the ribosome, NatA can form a ternary complex with the abundant pseudoenzyme Ebp1 or a second copy of NatA, which can be coordinated from a different binding site with closer access to a potential substrate. Further, we identify a conserved binding site on NatA, which can be accessed by four RAFs - Ebp1, NAC, Naa10 and HypK, allowing the formation of different multi-factor complexes at the ribosomal tunnel exit. Therefore, our data suggest that NatA constitutes an interaction hub, and contributes to the coordination of co-translational protein maturation.

N-terminal acetylation shapes protein fate during protein biosynthesis at the ribosome. Here the authors show that the NatA enzyme forms dynamic multi-factor complexes at the ribosome, acting as an interaction hub that coordinates cotranslational protein maturation.

## Linked entities

- **Genes:** natA (Na+ ABC efflux transporter (ATP-binding protein)) [NCBI Gene 938386], NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790], XK (X-linked Kx blood group antigen, Kell and VPS13A binding protein) [NCBI Gene 7504], NAA10 (N-alpha-acetyltransferase 10, NatA catalytic subunit) [NCBI Gene 8260], HYPK (huntingtin interacting protein K) [NCBI Gene 25764]
- **Proteins:** natA (Na+ ABC efflux transporter (ATP-binding protein)), NFKB1 (nuclear factor kappa B subunit 1), MAP2 (microtubule associated protein 2), NAA10 (N-alpha-acetyltransferase 10, NatA catalytic subunit), HYPK (huntingtin interacting protein K)

## Full-text entities

- **Genes:** APP (amyloid beta precursor protein) [NCBI Gene 351] {aka AAA, ABETA, ABPP, AD1, APPI, CTFgamma}, NAT1 (peptide alpha-N-acetyltransferase complex A subunit NAT1) [NCBI Gene 851521] {aka AAA1, NAA15}, NAA10 (N-alpha-acetyltransferase 10, NatA catalytic subunit) [NCBI Gene 8260] {aka ARD1, ARD1A, ARD1P, DXS707, LZMS, MAA}, XK (X-linked Kx blood group antigen, Kell and VPS13A binding protein) [NCBI Gene 7504] {aka KX, NA, NAC, X1k, XKR1}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, MDM20 (Mdm20p) [NCBI Gene 854079] {aka DEC1, NAA25}, ZHX2 (zinc fingers and homeoboxes 2) [NCBI Gene 22882] {aka AFR1, RAF}, SRP19 (signal recognition particle 19) [NCBI Gene 6728], NAA16 (N-alpha-acetyltransferase 16, NatA auxiliary subunit) [NCBI Gene 79612] {aka NARG1L}, MOAP1 (modulator of apoptosis 1) [NCBI Gene 64112] {aka MAP-1, PNMA4}, ARD1 (peptide alpha-N-acetyltransferase complex A subunit ARD1) [NCBI Gene 856404] {aka NAA10}, SNCA (synuclein alpha) [NCBI Gene 6622] {aka NACP, PARK1, PARK4, PD1}, NMT1 (N-myristoyltransferase 1) [NCBI Gene 4836] {aka HsNMT1, NMT}, NAA30 (N-alpha-acetyltransferase 30, NatC catalytic subunit) [NCBI Gene 122830] {aka C14orf35, MAK3, Mak3p, NAT12, NAT12P}, MASP1 (MBL associated serine protease 1) [NCBI Gene 5648] {aka 3MC1, CRARF, CRARF1, MAP-1, MAP1, MASP}, NACA (nascent polypeptide associated complex subunit alpha) [NCBI Gene 4666] {aka HSD48, NAC-alpha, NACA1, skNAC}, ACSM3 (acyl-CoA synthetase medium chain family member 3) [NCBI Gene 6296] {aka SA, SAH}, HAL (histidine ammonia-lyase) [NCBI Gene 3034] {aka HIS, HSTD}, HYPK (huntingtin interacting protein K) [NCBI Gene 25764] {aka C15orf63, HSPC136}, GLYATL1 (glycine-N-acyltransferase like 1) [NCBI Gene 92292] {aka GATF-C, GNAT}, NMT2 (N-myristoyltransferase 2) [NCBI Gene 9397], MAP1 (methionine aminopeptidase MAP1) [NCBI Gene 850945], NAA15 (N-alpha-acetyltransferase 15, NatA auxiliary subunit) [NCBI Gene 80155] {aka Ga19, MRD50, NARG1, NAT1P, NATH, TBDN}, MAP2 (methionine aminopeptidase) [NCBI Gene 852187], MAP2 (microtubule associated protein 2) [NCBI Gene 4133] {aka MAP-2, MAP2A, MAP2B, MAP2C}, TTC1 (tetratricopeptide repeat domain 1) [NCBI Gene 7265] {aka TPR1}, MBP (myelin basic protein) [NCBI Gene 4155], SRP68 (signal recognition particle 68) [NCBI Gene 6730] {aka SCN10}, BTF3 (basic transcription factor 3) [NCBI Gene 689] {aka BETA-NAC, BTF3a, BTF3b, NACB}, NAT3 (peptide alpha-N-acetyltransferase complex B subunit NAT3) [NCBI Gene 856249] {aka NAA20, RAD56}, PA2G4 (proliferation-associated 2G4) [NCBI Gene 5036] {aka EBP1, HG4-1, ITAF45, p38-2G4}, NAA50 (N-alpha-acetyltransferase 50, NatE catalytic subunit) [NCBI Gene 80218] {aka MAK3, NAT13, NAT13P, NAT5, NAT5P, SAN}
- **Diseases:** cancer (MESH:D009369), NME (MESH:D000072662), NTA (OMIM:300855)
- **Chemicals:** Cysteine (MESH:D003545), ACN (MESH:C032159), EZ-Link NHS-PEG4-Biotin (-), methionine (MESH:D008715), Biotin (MESH:D001710), Peptides (MESH:D010455), nitrogen (MESH:D009584), IPTG (MESH:D007544), TFA (MESH:D014269), SDS (MESH:D012967), Imidazole (MESH:C029899), AS (MESH:D001151), salt (MESH:D012492), Agarose (MESH:D012685), KOH (MESH:C029943), NatA (MESH:C016952), FA (MESH:C030544), HCl (MESH:D006851), DTT (MESH:D004229), PBS (MESH:D007854), CAA (MESH:C013874), water (MESH:D014867), NaCl (MESH:D012965), ethane (MESH:D004980), HEPES (MESH:D006531), EDTA (MESH:D004492), EM (MESH:D004961), CaCl2 (MESH:D002122), TCEP (MESH:C080938), NP-40 (MESH:C010615), Tween-20 (MESH:D011136), copper (MESH:D003300), sucrose (MESH:D013395), PVDF (MESH:C024865), oxygen (MESH:D010100)
- **Species:** Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Homo sapiens (human, species) [taxon 9606], Drosophila melanogaster (fruit fly, species) [taxon 7227], Escherichia coli (E. coli, species) [taxon 562], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Mus musculus (house mouse, species) [taxon 10090], Caenorhabditis elegans (species) [taxon 6239]
- **Cell lines:** ES27L — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_W926), HeLa S3 — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0058), HeLa — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0030)

## Full text

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## Figures

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## References

5 references — full list in the complete paper: https://tomesphere.com/paper/PMC12830823/full.md

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Source: https://tomesphere.com/paper/PMC12830823