# DFT supported computational insights into Withaferin A structure and its binding interaction with Hsp90

**Authors:** Romash Shoni, Phadindra Raj Karki, Khagendra Tripathi

PMC · DOI: 10.1038/s41598-025-33145-w · Scientific Reports · 2025-12-29

## TL;DR

This study uses computational methods to explore the structure and binding of Withaferin A to Hsp90, showing its potential as a drug candidate.

## Contribution

The paper provides novel computational insights into Withaferin A's electronic and structural properties and its binding to Hsp90.

## Key findings

- Withaferin A shows strong electron delocalization and stable molecular configuration.
- Molecular docking reveals strong binding affinity to Hsp90 via hydrogen bonds and Van der Waals interactions.
- Thermodynamic assessments confirm its stability across varying temperatures.

## Abstract

Withaferin A, a bioactive steroidal lactone, was systematically investigated using density functional theory (DFT) and complementary computational approaches to understand its structural stability, electronic reactivity, and therapeutic potential. The combined spectroscopic and electronic analyses confirmed strong electron delocalization, stable molecular configuration, and favorable charge-transfer characteristics. Natural bond orbital and frontier molecular orbital studies revealed extensive hyperconjugation and high kinetic stability, while thermodynamic assessments indicated spontaneous and stable behavior across varying temperatures. Molecular docking with Hsp90 demonstrated strong binding affinity, stabilized by hydrogen bonding and Van der Waals interactions with key residues. These findings highlight Withaferin A’s structural robustness, electronic versatility, and potent binding characteristics, supporting its promise as a therapeutic inhibitor. Overall, this integrative computational study provides valuable molecular-level insights that can guide future experimental validation and rational drug design involving Hsp90-targeted compounds.

## Linked entities

- **Proteins:** HSP90AA1 (heat shock protein 90 alpha family class A member 1)
- **Chemicals:** Withaferin A (PubChem CID 265237)

## Full-text entities

- **Genes:** HSP90AA1 (heat shock protein 90 alpha family class A member 1) [NCBI Gene 3320] {aka EL52, HEL-S-65p, HSP86, HSP89A, HSP90A, HSP90N}
- **Chemicals:** Withaferin A (MESH:C009684)

## Full text

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## Figures

15 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12830739/full.md

## References

4 references — full list in the complete paper: https://tomesphere.com/paper/PMC12830739/full.md

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Source: https://tomesphere.com/paper/PMC12830739