# γδ T cell receptor recognition of CD1d in a lipid-independent manner

**Authors:** Michael T. Rice, Sachith D. Gunasinghe, Chhon Ling Sok, Mengqi Pan, Chan-Sien Lay, Benjamin S. Gully, Jamie Rossjohn

PMC · DOI: 10.1038/s41467-025-67653-0 · Nature Communications · 2025-12-29

## TL;DR

This paper shows how γδ T cells can recognize CD1d molecules without needing a specific lipid, revealing a new way these immune cells detect antigens.

## Contribution

The study reveals the molecular mechanism of lipid-independent CD1d recognition by γδ T cell receptors.

## Key findings

- γδ T cell receptors can recognize CD1d in a lipid-independent manner.
- The structure of a γδ TCR-CD1d complex shows no contact with the presented lipid.
- Endogenous lipids on CD1d are sufficient to activate γδ T cells.

## Abstract

The monomorphic antigen-presenting molecule CD1d presents lipid antigens to both αβ and γδ T cells. While type I natural killer T cells (NKT) display exquisite specificity for CD1d presenting α-galactosylceramide (α-GalCer), the extent of lipid specificity exhibited by CD1d-restricted γδ T cells remains unclear. Here, we demonstrate that human γδ T cell receptors (TCRs) can recognise CD1d in either a lipid-dependent or lipid-independent manner with weak to moderate affinity. Using small-angle X-Ray scattering, we find that γδ TCR-CD1d binding modality is conserved across distinct CD1d-restricted TCRs. In functional assays, CD1d γδ TCR affinity was a poor predictor of γδ T cell line activation. Moreover, CD1d presenting endogenous lipids was sufficient to stimulate T cell activation and induce γδ TCR-CD3 clustering and phosphorylation in a dose-dependent manner. Elongation of the γδ TCR-CD3 complex by the inclusion of the Cγ2 and Cγ3 -encoded constant domains perturbed cellular activation whilst maintaining the ability to form functional γδ TCR clusters. The crystal structure of a Vδ1 γδ+ TCR-CD1d complex showed that the γδ TCR sat atop of the CD1d antigen-binding cleft but made no contacts with the presented lipid antigen. These findings provide a molecular basis for lipid-independent CD1d recognition by γδ TCRs.

T cells can recognise lipid antigen in the context of CD1d molecules. Here, the authors show that γδ T cell activation in response to CD1d differs from that of αβ T cells and determine the structure of a γδ T cell receptor that binds to CD1d independently of the presented lipid.

## Linked entities

- **Proteins:** CD1D (CD1d molecule), Tcr (Third chromosome alpha methyl dopa-resistant), cd.3 (Cd.3 conserved hypothetical protein), TMEM245 (transmembrane protein 245), CG-3 (beta-conglycinin alpha-subunit)
- **Chemicals:** α-galactosylceramide (PubChem CID 2826713), α-GalCer (PubChem CID 2826713)

## Full-text entities

- **Genes:** IGHG3 (immunoglobulin heavy constant gamma 3 (G3m marker)) [NCBI Gene 3502] {aka IgG3}, CD1D (CD1d molecule) [NCBI Gene 912] {aka R3, R3G1}, APP (amyloid beta precursor protein) [NCBI Gene 351] {aka AAA, ABETA, ABPP, AD1, APPI, CTFgamma}, TRBV20OR9-2 (T cell receptor beta variable 20/OR9-2 (non-functional)) [NCBI Gene 6962] {aka CDR3, TCRBV20S2, TCRBV2O, TCRBV2S2O}
- **Chemicals:** lipid (MESH:D008055), lipid antigen (-), alpha-GalCer (MESH:C493154)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12830645/full.md

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Source: https://tomesphere.com/paper/PMC12830645