# Geometry-aware point cloud clustering for spherical-component aggregate modeling

**Authors:** Yuta Muramatsu, Syuhei Sato, Kaisei Sakurai

PMC · DOI: 10.1038/s41598-025-32832-y · Scientific Reports · 2025-12-20

## TL;DR

This paper introduces a method to create individual 3D models of small, spherical components like grapes from a point cloud of an aggregate.

## Contribution

The novelty lies in geometry-aware clustering that segments overlapping spherical components in aggregates.

## Key findings

- The method successfully segments overlapping spherical components in aggregates.
- It was tested on grapes and tomatoes, showing promising results.
- Merging clusters improves modeling accuracy when components overlap.

## Abstract

This paper proposes a method for obtaining independent mesh models of individual components from a point cloud representing an aggregate. An aggregate consists of a collection of small, similar components, such as individual grapes in a bunch. Typical shape reconstruction creates a rough shape of the entire bunch, but fails to recover individual components from the bunch due to occlusion and missing points for shapes. To achieve this type of modeling, we assume that each component can be approximated as a spherical shape. Leveraging this assumption, we develop geometry-aware clustering that identifies and segments individual components from the aggregate. During this procedure, we search for the optimal position and size of a predefined aggregate component that best fits the cluster. When overlapping components are detected, the corresponding clusters are merged. We demonstrate the effectiveness of the proposed method by applying it to several types of aggregates, such as grapes and tomatoes.

## Full-text entities

- **Species:** Solanum lycopersicum (tomato, species) [taxon 4081]

## Full text

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12830384/full.md

## References

13 references — full list in the complete paper: https://tomesphere.com/paper/PMC12830384/full.md

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Source: https://tomesphere.com/paper/PMC12830384