# Identification and biological evaluation of benzimidazole-based compounds as novel TGFβR1 inhibitors

**Authors:** Hui-Ju Tseng, Yi-Wen Wu, Yan-Ling Chen, Tony Eight Lin, Yu-Ting Fang-Chin, Yueh-Lin Wu, Tzu-Ying Sung, Shih-Chung Yen, Jui-Hua Hsieh, Kai-Cheng Hsu, Shiow-Lin Pan

PMC · DOI: 10.1080/14756366.2025.2600746 · Journal of Enzyme Inhibition and Medicinal Chemistry · 2026-01-21

## TL;DR

Researchers identified a promising new compound that inhibits TGFβR1, a target linked to cancer progression, with potential for cancer therapy.

## Contribution

A novel benzimidazole-based TGFβR1 inhibitor with sub-micromolar potency and selectivity was identified and biologically validated.

## Key findings

- Compound 3282-0486 showed sub-micromolar IC50 values and induced apoptosis in colorectal cancer cells.
- Molecular docking and structure–activity relationship analysis confirmed favorable binding and key structural features.
- Compound 3282-0486 demonstrated selectivity for TGFβR1 and affected downstream signaling markers like p-Smad2 and EMT.

## Abstract

TGF-β promotes progression and metastasis in later stages of tumour development, and inhibitors targeting TGF-β or its receptor have faced clinical limitations due to toxicity and poor selectivity. This study aimed to identify novel TGFβR1 inhibitors by screening the ChemDiv database using a structure-based virtual screening approach. Among the top-ranked compounds, 3282–0487 showed the highest potency. Its analogues were further evaluated, leading to four potent TGFβR1 inhibitors with sub-micromolar IC50 values. Molecular docking confirmed favourable binding interactions, and structure–activity relationship analysis highlighted key structural features contributing to inhibitory activity. Among these, compound 3282-0486 demonstrated the lowest IC50 values against colorectal cancer cells, inducing apoptosis and dose-dependent anti-migration effects. Its efficacy was further supported by changes in downstream TGFβR1 signalling, including p-Smad2, EMT markers, and PARP1 cleavage. Additionally, compound 3282-0486 exhibited selectivity for TGFβR1. Overall, these findings support compound 3282-0486 as a promising TGFβR1 inhibitor with therapeutic potential.

## Linked entities

- **Proteins:** TGFBR1 (transforming growth factor beta receptor 1), PARP1 (poly(ADP-ribose) polymerase 1)
- **Chemicals:** benzimidazole (PubChem CID 5798)
- **Diseases:** colorectal cancer (MONDO:0005575)

## Full-text entities

- **Genes:** AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, PARP1 (poly(ADP-ribose) polymerase 1) [NCBI Gene 142] {aka ADPRT, ADPRT 1, ADPRT1, ARTD1, PARP, PARP-1}, BRAF (B-Raf proto-oncogene, serine/threonine kinase) [NCBI Gene 673] {aka B-RAF1, B-raf, BRAF-1, BRAF1, NS7, RAFB1}, SMAD2 (SMAD family member 2) [NCBI Gene 4087] {aka CHTD8, JV18, JV18-1, LDS6, MADH2, MADR2}, TXK (TXK tyrosine kinase) [NCBI Gene 7294] {aka BTKL, PSCTK5, PTK4, RLK, TKL}, SMAD4 (SMAD family member 4) [NCBI Gene 4089] {aka DPC4, JIP, MADH4, MYHRS}, Parp1 (poly (ADP-ribose) polymerase family, member 1) [NCBI Gene 11545] {aka 5830444G22Rik, ARTD1, Adprp, Adprt1, PARP, PPOL}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, TGFBR1 (transforming growth factor beta receptor 1) [NCBI Gene 7046] {aka AAT5, ACVRLK4, ALK-5, ALK5, ESS1, LDS1}, CDH1 (cadherin 1) [NCBI Gene 999] {aka Arc-1, BCDS1, CD324, CDHE, ECAD, LCAM}, KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845] {aka 'C-K-RAS, C-K-RAS, CFC2, K-RAS2A, K-RAS2B, K-RAS4A}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, TGFBR2 (transforming growth factor beta receptor 2) [NCBI Gene 7048] {aka AAT3, FAA3, LDS1B, LDS2, LDS2B, MFS2}, VIM (vimentin) [NCBI Gene 7431], APC (APC regulator of Wnt signaling pathway) [NCBI Gene 324] {aka BTPS2, DESMD, DP2, DP2.5, DP3, GS}, Cdh1 (cadherin 1) [NCBI Gene 12550] {aka ARC-1, E-cad, Ecad, L-CAM, UVO, Um}, Tgfb1 (transforming growth factor, beta 1) [NCBI Gene 21803] {aka TGF-beta1, TGFbeta1, Tgfb, Tgfb-1}, Smad2 (SMAD family member 2) [NCBI Gene 17126] {aka 7120426M23Rik, Madh2, Madr2, Smad-2, mMad2}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, Vim (vimentin) [NCBI Gene 22352], JAK3 (Janus kinase 3) [NCBI Gene 3718] {aka JAK-3, JAK3_HUMAN, JAKL, L-JAK, LJAK}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, KDR (kinase insert domain receptor) [NCBI Gene 3791] {aka CD309, FLK1, VEGFR, VEGFR2}, RNASE1 (ribonuclease A family member 1, pancreatic) [NCBI Gene 6035] {aka RAC1, RIB1, RNS1}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, SMAD3 (SMAD family member 3) [NCBI Gene 4088] {aka HSPC193, HsT17436, JV15-2, LDS1C, LDS3, MADH3}
- **Diseases:** fibrosis (MESH:D005355), cancer (MESH:D009369), Cytotoxicity (MESH:D064420), glioma (MESH:D005910), Colorectal cancer (MESH:D015179), cardiac toxicity (MESH:D066126), SBVS (MESH:D020914), breast cancer (MESH:D001943), prostate cancer (MESH:D011471), metastasis (MESH:D009362), cardiovascular disease (MESH:D002318), rectal cancer (MESH:D012004)
- **Chemicals:** MgCl2 (MESH:D015636), furan (MESH:C039281), Antimycotic (-), 3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyl-2H-tetrazolium bromide (MESH:C000598529), SDS (MESH:D012967), Benzimidazoles (MESH:D001562), pyrrole (MESH:D011758), Eu (MESH:D005063), Galunisertib (MESH:C557799), imidazole (MESH:C029899), isoxazole (MESH:D007555), amide (MESH:D000577), PI (MESH:D010716), amino acids (MESH:D000596), Amphotericin B (MESH:D000666), thiophene (MESH:D013876), MTT (MESH:C070243), benzene (MESH:D001554), CO2 (MESH:D002245), benzoxazole (MESH:D001583), water (MESH:D014867), NaCl (MESH:D012965), 5-FU (MESH:D005472), MTT formazan (MESH:C079782), Hydrogen (MESH:D006859), imine (MESH:D007097), DMSO (MESH:D004121), streptomycin (MESH:D013307), propidium iodide (MESH:D011419), ethanol (MESH:D000431), penicillin (MESH:D010406), Triton X-100 (MESH:D017830), amine (MESH:D000588), 4,5,6,7-tetrabromobenzotriazole (MESH:C405354), ATP (MESH:D000255), benzimidazole (MESH:C031000), PVDF (MESH:C024865), SB-431542 (MESH:C459179), DPBS (MESH:C012939)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** HCT116 — Homo sapiens (Human), Colon carcinoma, Cancer cell line (CVCL_0291), HTB-38 — Mus musculus (Mouse), Hybridoma (CVCL_A8FQ), CCL-247 — Mus musculus (Mouse), Undefined cell line type (CVCL_M023), HT29 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0320)

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12829415/full.md

## References

48 references — full list in the complete paper: https://tomesphere.com/paper/PMC12829415/full.md

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Source: https://tomesphere.com/paper/PMC12829415