# RA-risk synovium exhibits DNA damage coupled with impaired DNA repair in fibroblasts

**Authors:** Aoife M O’Byrne, Tineke A de Jong, Johanna F Semmelink, Przemek M Krawczyk, Ron A Hoebe, Marleen van de Sande, Lisa van Baarsen

PMC · DOI: 10.1136/rmdopen-2025-005774 · RMD Open · 2026-01-22

## TL;DR

This study shows that DNA damage and poor repair in synovial tissue appear early in rheumatoid arthritis, suggesting a new target for early treatment.

## Contribution

The study identifies early DNA damage and impaired repair in RA-risk synovium and shows that senolytic drugs can partially restore repair.

## Key findings

- DNA damage is present in synovial fibroblasts and T cells during the preclinical RA-risk phase.
- RA-risk and RA fibroblasts show increased DNA damage and reduced repair capacity compared to controls.
- Senolytic drugs partially restore DNA repair in RA-risk and RA synovial fibroblasts in vitro.

## Abstract

Understanding the molecular changes in the preclinical synovium is crucial for identifying factors that drive arthritis development. Persistent DNA damage in tissues is known to drive a senescent microenvironment, genomic instability and ultimately chronic inflammation. Here, we determined cellular DNA damage and repair capacity within synovial tissue from rheumatoid arthritis (RA) patients and individuals at risk of developing RA.

We investigated the presence of senescence-associated DNA damage in synovial biopsies and synovial fibroblasts obtained during different phases of RA. Histone 2A is phosphorylated (γH2AX) at the site of a double-stranded DNA break where DNA repair proteins are recruited and is therefore a proxy measurement for DNA damage. In this study, we employed immunofluorescence staining for γH2AX on synovial tissue sections and cultured synovial fibroblasts alongside quantitative PCR for a panel of DNA repair proteins.

We demonstrated the presence of DNA damage in both synovial fibroblasts and T cells during the preclinical, RA-risk phase of disease. Furthermore, cultured synovial fibroblasts from RA-risk individuals and RA patients exhibited increased DNA damage and a reduced capacity for DNA repair compared with synovial fibroblasts from control individuals. Finally, treatment with senolytic drugs partially restored the DNA damage repair capacity in RA and RA-risk synovial fibroblasts in vitro.

Our findings reveal persistent DNA damage in the preclinical phase of RA in both synovial tissue and fibroblasts, suggesting a role in disease progression. The partial restoration of DNA repair in synovial fibroblasts by senolytic treatment highlights its potential therapeutic target for preventative therapy in RA-risk individuals.

## Linked entities

- **Proteins:** H2AXA (Histone superfamily protein)
- **Diseases:** rheumatoid arthritis (MONDO:0008383), arthritis (MONDO:0005578)

## Full-text entities

- **Genes:** PMS2 (PMS1 homolog 2, mismatch repair system component) [NCBI Gene 5395] {aka HNPCC4, LYNCH4, MLH4, MMRCS4, PMS-2, PMSL2}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, ERCC2 (ERCC excision repair 2, TFIIH core complex helicase subunit) [NCBI Gene 2068] {aka COFS2, CXPD, EM9, TFIIH, TTD, TTD1}, GLB1 (galactosidase beta 1) [NCBI Gene 2720] {aka EBP, ELNR1, MPS4B}, MLH1 (mutL homolog 1) [NCBI Gene 4292] {aka COCA2, FCC2, HNPCC, HNPCC2, LYNCH2, MLH-1}, CRP (C-reactive protein) [NCBI Gene 1401] {aka PTX1}, H2AX (H2A.X variant histone) [NCBI Gene 3014] {aka H2A.X, H2A/X, H2AFX}, FOXO4 (forkhead box O4) [NCBI Gene 4303] {aka AFX, AFX1, MLLT7}, PARP1 (poly(ADP-ribose) polymerase 1) [NCBI Gene 142] {aka ADPRT, ADPRT 1, ADPRT1, ARTD1, PARP, PARP-1}, LMNB1 (lamin B1) [NCBI Gene 4001] {aka ADLD, LMN, LMN2, LMNB, MCPH26}, TXK (TXK tyrosine kinase) [NCBI Gene 7294] {aka BTKL, PSCTK5, PTK4, RLK, TKL}, BCL2L1 (BCL2 like 1) [NCBI Gene 598] {aka BCL-XL/S, BCL2L, BCLX, Bcl-X, PPP1R52}, CDKN1A (cyclin dependent kinase inhibitor 1A) [NCBI Gene 1026] {aka CAP20, CDKN1, CIP1, MDA-6, P21, SDI1}, BRCA2 (BRCA2 DNA repair associated) [NCBI Gene 675] {aka BRCC2, BROVCA2, FACD, FAD, FAD1, FANCD}, EFNB1 (ephrin B1) [NCBI Gene 1947] {aka CFND, CFNS, EFB1, EFL3, EPLG2, Elk-L}, HMGB1 (high mobility group box 1) [NCBI Gene 3146] {aka HMG-1, HMG1, HMG3, SBP-1}, RAD51 (RAD51 recombinase) [NCBI Gene 5888] {aka BRCC5, FANCR, HRAD51, HsRad51, HsT16930, MRMV2}, TBP (TATA-box binding protein) [NCBI Gene 6908] {aka GTF2D, GTF2D1, HDL4, SCA17, TBP1, TFIID}, CD38 (CD38 molecule) [NCBI Gene 952] {aka ADPRC 1, ADPRC1, cADPR1}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, NAMPT (nicotinamide phosphoribosyltransferase) [NCBI Gene 10135] {aka 1110035O14Rik, PBEF, PBEF1, VF, VISFATIN}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, SOD2 (superoxide dismutase 2) [NCBI Gene 6648] {aka GC1, GClnc1, IPO-B, IPOB, MNSOD, MVCD6}, VIM (vimentin) [NCBI Gene 7431], MSH2 (mutS homolog 2) [NCBI Gene 4436] {aka COCA1, FCC1, HNPCC, HNPCC1, LCFS2, LYNCH1}, CDK4 (cyclin dependent kinase 4) [NCBI Gene 1019] {aka CMM3, MCPH31, PSK-J3}, MRE11 (MRE11 double strand break repair nuclease) [NCBI Gene 4361] {aka ATLD, HNGS1, MRE11A, MRE11B}, TP53BP1 (tumor protein p53 binding protein 1) [NCBI Gene 7158] {aka 53BP1, TDRD30, p202, p53BP1}, CDKN2A (cyclin dependent kinase inhibitor 2A) [NCBI Gene 1029] {aka ARF, CAI2, CDK4I, CDKN2, CMM2, INK4}, POLR2G (RNA polymerase II subunit G) [NCBI Gene 5436] {aka RPB19, RPB7, hRPB19, hsRPB7}, SIRT1 (sirtuin 1) [NCBI Gene 23411] {aka SIR2, SIR2L1, SIR2alpha}, ADGRE2 (adhesion G protein-coupled receptor E2) [NCBI Gene 30817] {aka CD312, CD97, EMR2, VBU}
- **Diseases:** arthralgia (MESH:D018771), tumour (MESH:D009369), RA (MESH:D001172), joint injury (MESH:D000092464), synovitis (MESH:D013585), mitochondrial dysfunction (MESH:D028361), precancerous (MESH:D011230), OA (MESH:D010003), autoimmune disease (MESH:D001327), hyperplasia (MESH:D006965), arthritis (MESH:D001168), chronic inflammation (MESH:D007249), gout (MESH:D006073), T (MESH:D001260), chronic (MESH:D002908)
- **Chemicals:** AlexaFluor633 (-), 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (MESH:C410687), AlexaFluor-488 (MESH:C000711379), DAPI (MESH:C007293), glucose (MESH:D005947), CO2 (MESH:D002245), PBS (MESH:D007854), saponin (MESH:D012503), Dasatinib (MESH:D000069439), water (MESH:D014867), ACPA (MESH:C086759), penicillin (MESH:D010406), Triton x100 (MESH:D017830), PFA (MESH:C003043), streptomycin (MESH:D013307), reactive oxygen species (MESH:D017382)
- **Species:** Homo sapiens (human, species) [taxon 9606], Rattus norvegicus (brown rat, species) [taxon 10116], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** FLS — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0594)

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12829405/full.md

## References

84 references — full list in the complete paper: https://tomesphere.com/paper/PMC12829405/full.md

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Source: https://tomesphere.com/paper/PMC12829405