# The Interplay of Light Signaling and SlAN1 Expression in Regulating Anthocyanin Accumulation in Fruit Tissues of Purple Tomatoes

**Authors:** Gabriel Lasmar dos Reis, Chaiane Fernandes Vaz, Luis Willian Pacheco Arge, Adolfo Luís dos Santos, Samuel Chaves‐Silva, Agustín Zsögön, Lázaro Eustáquio Pereira Peres, Antonio Chalfun‐Junior, Vagner Augusto Benedito

PMC · DOI: 10.1111/ppl.70740 · 2026-01-22

## TL;DR

This study explores how light and a gene called SlAN1 control anthocyanin accumulation in purple tomatoes, focusing on how light affects fruit coloration.

## Contribution

The study reveals that the epicarp blocks light from reaching the flesh, and SlAN1 is a key regulator of light-dependent anthocyanin accumulation.

## Key findings

- Anthocyanin accumulation in the flesh is blocked by the cyanic epicarp, which prevents light penetration.
- The bHLH transcription factor SlAN1 appears to be the limiting factor for anthocyanin accumulation in both peel and flesh.
- Light-dependent regulation of anthocyanin biosynthesis is influenced by genetic and environmental factors in tomato fruits.

## Abstract

Anthocyanins are specialized plant metabolites with significant dietary value due to their anti‐inflammatory properties. Research indicates that dietary intake of these phenolic compounds contributes to preventing various chronic diseases. As the most consumed vegetable worldwide, tomato (
Solanum lycopersicum
) is an excellent candidate for anthocyanin‐enrichment strategies. In tomato, the activation of anthocyanin biosynthesis is light‐dependent, but this mechanism has yet to be entirely characterized. We investigated the role of light in anthocyanin biosynthesis in purple tomato fruits generated by combining the Anthocyanin fruit (Aft), atroviolacea (atv), and high‐pigment 2 (hp2) mutations into cv. Micro‐Tom (MT). MT‐Aft/atv/hp2 starts accumulating anthocyanins early during fruit development, but this accumulation is restricted to the peel (exocarp and epicarp). By manipulating light incidence in different fruit tissues, we determined that the absence of anthocyanin accumulation in the flesh results from the sun‐blocking effect of the cyanic epicarp on the flesh (mesocarp), thus preventing light from penetrating deeper into the fruits. Comparative transcriptional analyses of the fruit peel and flesh indicated that the bHLH transcription factor SlAN1 (Solyc09g065100) may be the limiting factor for light‐dependent anthocyanin accumulation in both tissues. This research enhances our comprehension of the genetic and environmental regulation of anthocyanin accumulation in fruit tissues, offering valuable insights into plant breeding for human nutrition.

## Linked entities

- **Genes:** LOC101254527 (bHLH transcription factor AH) [NCBI Gene 101254527], CMTR2 (cap methyltransferase 2) [NCBI Gene 55783], NBN (nibrin) [NCBI Gene 4683], HP2 (hypothetical protein 2) [NCBI Gene 30902369]
- **Chemicals:** anthocyanins (PubChem CID 145858)
- **Species:** Solanum lycopersicum (taxon 4081)

## Full-text entities

- **Genes:** WRKY [NCBI Gene 100191122], MYB [NCBI Gene 544113], HY5 [NCBI Gene 543733], COP1 [NCBI Gene 543547], CRY3 [NCBI Gene 101248230], THM27 [NCBI Gene 544294], SPL-CNR (SQUAMOSA promoter binding protein-like) [NCBI Gene 101256245] {aka CNR, LeSPL-CNR, SBP-CNR}, R2R3 MYB [NCBI Gene 101263611], DET1 [NCBI Gene 778329], bHLH1 (basic helix-loop-helix) [NCBI Gene 101055586]
- **Diseases:** obesity (MESH:D009765), type 2 diabetes (MESH:D003924), cancer (MESH:D009369), cardiovascular disorders (MESH:D002318), inflammatory (MESH:D007249), hypersensitivity (MESH:D004342)
- **Chemicals:** agarose (MESH:D012685), lycopene (MESH:D000077276), flavone (MESH:C043562), tryptophan (MESH:D014364), flavonol (MESH:C041477), phenylalanine (MESH:D010649), Aromatic amino acid (MESH:D024322), nitrogen (MESH:D009584), Trizol (MESH:C411644), Anthocyanin (MESH:D000872), flavonols (MESH:D044948), carotenoids (MESH:D002338), geraniol (MESH:C007836), ascorbic acid (MESH:D001205), Aft (-), tyrosine (MESH:D014443), ROS (MESH:D017382), chalcones (MESH:D047188), terpenes (MESH:D013729), water (MESH:D014867), flavonoid (MESH:D005419), beta-carotene (MESH:D019207)
- **Species:** Malus domestica (apple, species) [taxon 3750], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Solanum lycopersicoides (species) [taxon 142760], Mangifera indica (mango, species) [taxon 29780], Solanum lycopersicum (tomato, species) [taxon 4081], Thysanoptera (thrips, order) [taxon 30262], Solanum cheesmaniae (species) [taxon 142759], Solanum peruvianum (Peruvian tomato, species) [taxon 4082], Solanum chilense (species) [taxon 4083], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** 5.8S — Mus musculus (Mouse), Transformed cell line (CVCL_C4LI)

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12828296/full.md

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Source: https://tomesphere.com/paper/PMC12828296