# A novel dual histone mark reader ZCWPW2 regulates meiotic recombination through lactylation and transcriptional regulation in humans and mice

**Authors:** Tiechao Ruan, Jun Ma, Gan Shen, Xiang Wang, Yihong Yang, Liangchai Zhuo, Chuan Jiang, Guicheng Zhao, Yunchuan Tian, Shikun Zhao, Ruixi Zhou, Mohan Liu, Xinyao Tang, Yingteng Zhang, Chanjuan Zhao, Jincheng Zhang, Dingming Li, Xiaohui Jiang, Dezhi Mu, Lingbo Wang, Ying Shen

PMC · DOI: 10.1093/nar/gkag049 · 2026-01-23

## TL;DR

This study identifies ZCWPW2 as a key regulator of meiotic recombination in humans and mice, showing it works with ZCWPW1 and PRDM9 to control recombination through lactylation and transcription.

## Contribution

ZCWPW2 is newly identified as a dual histone mark reader essential for meiotic recombination through lactylation and transcriptional regulation.

## Key findings

- ZCWPW2 deficiency causes recombination defects, including impaired chromosome synapsis and DNA repair.
- ZCWPW2 interacts with ZCWPW1 and recombination proteins to promote lactylation of key recombination factors.
- ZCWPW2 regulates meiotic transcription independently of PRDM9 at promoter regions.

## Abstract

Meiotic recombination ensures accurate chromosome segregation and genetic diversity during gametogenesis, and its disruption leads to infertility. The dual histone methylation writer–reader system, in which PRDM9 deposits H3K4me3 and H3K36me3 marks at nucleosomes to define recombination hotspots and ZCWPW1 acts as a reader recognizing these marks, is essential for meiotic recombination. However, the regulatory mechanisms of this system remain unclear. Here, we showed that deficiency of ZCWPW2 causes recombination defects in humans and mice, including impaired homologous chromosome synapsis and defective DNA double-strand break repair. CUT&Tag analysis revealed that ZCWPW2 exhibits increased enrichment at dual H3K4me3 and H3K36me3 sites in the presence of PRDM9, while binding to promoter regions independently of PRDM9 to regulate meiotic transcription. Mass spectrometry further showed that ZCWPW2 forms a complex with ZCWPW1 and interacts with recombination-associated proteins in a ZCWPW1-dependent manner. Mechanistically, we demonstrate that the ZCWPW1–ZCWPW2 complex enhances the functions of key lactylation regulators LDHA and EP300, thereby promoting lactylation of recombination-associated proteins and stabilizing their abundance. Collectively, we identify ZCWPW2 as a previously unrecognized but essential factor in meiotic recombination, elucidate the molecular mechanism of the PRDM9/ZCWPW1/ZCWPW2 system in regulating recombination, and uncover a critical role for lactylation in meiosis.

Graphical Abstract

## Linked entities

- **Genes:** ZCWPW2 (zinc finger CW-type and PWWP domain containing 2) [NCBI Gene 152098], ZCWPW1 (zinc finger CW-type and PWWP domain containing 1) [NCBI Gene 55063], PRDM9 (PR/SET domain 9) [NCBI Gene 56979], LDHA (lactate dehydrogenase A) [NCBI Gene 3939], EP300 (EP300 lysine acetyltransferase) [NCBI Gene 2033]
- **Proteins:** ZCWPW2 (zinc finger CW-type and PWWP domain containing 2), ZCWPW1 (zinc finger CW-type and PWWP domain containing 1), PRDM9 (PR/SET domain 9), LDHA (lactate dehydrogenase A), EP300 (EP300 lysine acetyltransferase)
- **Species:** Homo sapiens (taxon 9606), Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** KDM1A (lysine demethylase 1A) [NCBI Gene 23028] {aka AIMAH3, AOF2, BHC110, CPRF, KDM1, LSD1}, RAD51AP1 (RAD51 associated protein 1) [NCBI Gene 10635] {aka PIR51}, Mlh3 (mutL homolog 3) [NCBI Gene 217716], SMARCD3 (SWI/SNF related BAF chromatin remodeling complex subunit D3) [NCBI Gene 6604] {aka BAF60C, CRACD3, Rsc6p}, EP300 (EP300 lysine acetyltransferase) [NCBI Gene 2033] {aka KAT3B, MKHK2, RSTS2, p300}, PRDM9 (PR/SET domain 9) [NCBI Gene 56979] {aka KMT8B, MEISETZ, MSBP3, PFM6, ZNF899}, Ldha (lactate dehydrogenase A) [NCBI Gene 16828] {aka Ldh1, Ldhm, l7R2}, LDHB (lactate dehydrogenase B) [NCBI Gene 3945] {aka HEL-S-281, LDH-B, LDH-H, LDHBD, TRG-5}, SYCE1 (synaptonemal complex central element protein 1) [NCBI Gene 93426] {aka C10orf94, CT76, POF12, SPGF15}, Sycp1 (synaptonemal complex protein 1) [NCBI Gene 20957] {aka SCP1}, ATAD2 (ATPase family AAA domain containing 2) [NCBI Gene 29028] {aka ANCCA, CT137, PRO2000}, HSPA2 (heat shock protein family A (Hsp70) member 2) [NCBI Gene 3306] {aka HSP70-2, HSP70-3}, SMARCA2 (SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2) [NCBI Gene 6595] {aka BAF190, BIS, BRM, NCBRS, SAMRCA2, SNF2}, RUVBL1 (RuvB like AAA ATPase 1) [NCBI Gene 8607] {aka ECP-54, ECP54, INO80H, NMP 238, NMP238, PONTIN}, ZCWPW2 (zinc finger CW-type and PWWP domain containing 2) [NCBI Gene 152098] {aka ZCW2}, Ep300 (E1A binding protein p300) [NCBI Gene 328572] {aka A430090G16, A730011L11, KAT3B, p300, p300 HAT}, MDC1 (mediator of DNA damage checkpoint 1) [NCBI Gene 9656] {aka NFBD1}, DOT1L (DOT1 like histone lysine methyltransferase) [NCBI Gene 84444] {aka DOT1, KMT4, NDNS}, TEX11 (testis expressed 11) [NCBI Gene 56159] {aka MZIP4, SPGFX2, Spo22, TGC1, TSGA3, ZIP4}, ATM (ATM serine/threonine kinase) [NCBI Gene 472] {aka AT1, ATA, ATC, ATD, ATDC, ATE}, KAT7 (lysine acetyltransferase 7) [NCBI Gene 11143] {aka HBO1, HBOA, MYST2, ZC2HC7}, Prdm9 (PR domain containing 9) [NCBI Gene 213389] {aka Dsbc1, G1-419-29, Meisetz, PRDM9-B, Rcr1, repro7}, ANKRD31 (ankyrin repeat domain 31) [NCBI Gene 256006], MRE11 (MRE11 double strand break repair nuclease) [NCBI Gene 4361] {aka ATLD, HNGS1, MRE11A, MRE11B}, MSH2 (mutS homolog 2) [NCBI Gene 4436] {aka COCA1, FCC1, HNPCC, HNPCC1, LCFS2, LYNCH1}, MSH6 (mutS homolog 6) [NCBI Gene 2956] {aka GTBP, GTMBP, HNPCC5, HSAP, LYNCH5, MMRCS3}, SMARCA5 (SNF2 related chromatin remodeling ATPase 5) [NCBI Gene 8467] {aka ISWI, SNF2H, WCRF135, hISWI, hSNF2H}, RAD51C (RAD51 paralog C) [NCBI Gene 5889] {aka BROVCA3, FANCO, R51H3, RAD51L2}, RAD21 (RAD21 cohesin complex component) [NCBI Gene 5885] {aka CDLS4, HR21, HRAD21, MCD1, MGS, NXP1}, DMC1 (DNA meiotic recombinase 1) [NCBI Gene 11144] {aka DMC1H, LIM15, dJ199H16.1}, PARP1 (poly(ADP-ribose) polymerase 1) [NCBI Gene 142] {aka ADPRT, ADPRT 1, ADPRT1, ARTD1, PARP, PARP-1}, NAT10 (N-acetyltransferase 10) [NCBI Gene 55226] {aka ALP, Kre33, NET43}, CHTOP (chromatin target of PRMT1) [NCBI Gene 26097] {aka C10orf77, C1orf77, FL-SRAG, FOP, SRAG, SRAG-3}, Zcwpw1 (zinc finger, CW type with PWWP domain 1) [NCBI Gene 381678] {aka Gm1053}, SMARCC1 (SWI/SNF related BAF chromatin remodeling complex subunit C1) [NCBI Gene 6599] {aka BAF155, CRACC1, HYC5, Rsc8, SRG3, SWI3}, ZCWPW1 (zinc finger CW-type and PWWP domain containing 1) [NCBI Gene 55063] {aka ZCW1}, SPATA22 (spermatogenesis associated 22) [NCBI Gene 84690] {aka NYD-SP20, NYDSP20, POF25, SPGF96}, MLH1 (mutL homolog 1) [NCBI Gene 4292] {aka COCA2, FCC2, HNPCC, HNPCC2, LYNCH2, MLH-1}, Msh4 (mutS homolog 4) [NCBI Gene 55993] {aka 4930485C04Rik, mMsh4}, SYCP1 (synaptonemal complex protein 1) [NCBI Gene 6847] {aka CT8, HOM-TES-14, SCP-1, SCP1}, SYCP3 (synaptonemal complex protein 3) [NCBI Gene 50511] {aka COR1, RPRGL4, SCP3, SPGF4}, LDHA (lactate dehydrogenase A) [NCBI Gene 3939] {aka GSD11, HEL-S-133P, LDHM, PIG19}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, BARD1 (BRCA1 associated RING domain 1) [NCBI Gene 580], BRD1 (bromodomain containing 1) [NCBI Gene 23774] {aka BRL, BRPF2}, ELP3 (elongator acetyltransferase complex subunit 3) [NCBI Gene 55140] {aka KAT9}, PHF8 (PHD finger protein 8) [NCBI Gene 23133] {aka JHDM1F, KDM7B, MRXSSD, ZNF422}, Dmc1 (DNA meiotic recombinase 1) [NCBI Gene 13404] {aka Dmc1h, Lim15, Mei11, sgdp}, RPA2 (replication protein A2) [NCBI Gene 6118] {aka REPA2, RP-A p32, RP-A p34, RPA32}, RAD51 (RAD51 recombinase) [NCBI Gene 5888] {aka BRCC5, FANCR, HRAD51, HsRad51, HsT16930, MRMV2}, RUVBL2 (RuvB like AAA ATPase 2) [NCBI Gene 10856] {aka CGI-46, ECP-51, ECP51, INO80J, REPTIN, RVB2}, Zcwpw2 (zinc finger, CW type with PWWP domain 2) [NCBI Gene 100039681] {aka 4930430K04Rik}, PGR (progesterone receptor) [NCBI Gene 5241] {aka NR3C3, PR}, Sycp3 (synaptonemal complex protein 3) [NCBI Gene 20962] {aka Cor1, Scp3}, LDHC (lactate dehydrogenase C) [NCBI Gene 3948] {aka CT32, LDH3, LDHX}, PRMT1 (protein arginine methyltransferase 1) [NCBI Gene 3276] {aka ANM1, HCP1, HRMT1L2, IR1B4}, SUPT16H (SPT16 homolog, facilitates chromatin remodeling subunit) [NCBI Gene 11198] {aka CDC68, FACTP140, NEDDFAC, SPT16, SPT16/CDC68}, SMC2 (structural maintenance of chromosomes 2) [NCBI Gene 10592] {aka CAP-E, CAPE, SMC-2, SMC2L1}
- **Diseases:** tumorigenesis (MESH:D063646), ZCWPW1 deficiency (MESH:D007153), synaptic (MESH:D012183), synapsis defect (MESH:D000013), fertility (MESH:D007246), lactate deficiency (MESH:D007775), synapsis failure (MESH:D051437), premature ovarian insufficiency (MESH:D016649), NOA (MESH:D053713)
- **Chemicals:** H2O. (MESH:D014867), NaCl (MESH:D012965), lactyl-CoA. (MESH:C047009), Coomassie Brilliant Blue (MESH:C004692), SYBR Green (MESH:C098022), polyacrylamide (MESH:C016679), hematoxylin (MESH:D006416), DTT (MESH:D004229), Paraffin (MESH:D010232), sucrose (MESH:D013395), ATP (MESH:D000255), polyvinylidene fluoride (MESH:C024865), H&amp;E (MESH:D006371), urea (MESH:D014508), eosin (MESH:D004801), EDTA (MESH:D004492), ethanol (MESH:D000431), acetone (MESH:D000096), DMSO (MESH:D004121), Triton X-100 (MESH:D017830), PFA (MESH:C003043), NP-40 (MESH:C010615), PMSF (MESH:D010664), Lactate (MESH:D019344), peptides (MESH:D010455), xylene (MESH:D014992), sodium citrate (MESH:D000077559), TSA (MESH:C481298), TBS (MESH:D013725), acetonitrile (MESH:C032159), Dulbecco's Modified Eagle Medium (-), formazan (MESH:D005562), WST-8 (MESH:C476329), DAPI (MESH:C007293), HCl (MESH:D006851), L (MESH:D007930), formic acid (MESH:C030544), Co (MESH:D003035), nitrogen (MESH:D009584), SDS (MESH:D012967), TCA (MESH:D014238), iodoacetamide (MESH:D007460), TEAB (MESH:C041737)
- **Species:** Lontra canadensis (Northern American river otter, species) [taxon 76717], Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090], Equus caballus (domestic horse, species) [taxon 9796], Rattus norvegicus (brown rat, species) [taxon 10116]
- **Mutations:** S0208S, C0105M, c.557_558del
- **Cell lines:** CRL-2196 — Sigmodon hispidus (Hispid cotton rat), Spontaneously immortalized cell line (CVCL_YD58), GC-2 — Mus musculus (Mouse), Conditionally immortalized cell line (CVCL_6633), /6 — Homo sapiens (Human), Tongue squamous cell carcinoma, Cancer cell line (CVCL_5985), CRL-11268 — Homo sapiens (Human), Frontotemporal dementia, Transformed cell line (CVCL_HR73), HEK293T — Homo sapiens (Human), Transformed cell line (CVCL_0063)

## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12828234/full.md

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Source: https://tomesphere.com/paper/PMC12828234