# Aspergillus fumigatus PolX1 is an early ancestor of vertebrate terminal deoxynucleotidyl transferases

**Authors:** Najma Parveen, Sophia Steblina, Abhijit Behera, Caecilie M Benckendorff, Gavin J Miller, Katie E Davis, Purba Mukherjee

PMC · DOI: 10.1093/nar/gkaf1497 · 2026-01-23

## TL;DR

A DNA polymerase from the fungus Aspergillus fumigatus shows template-independent DNA synthesis, similar to vertebrate enzymes, suggesting this ability evolved earlier than previously thought.

## Contribution

The discovery of a fungal terminal deoxynucleotidyl transferase (TdT) challenges the belief that template independence evolved only in metazoans.

## Key findings

- AfPolX1 from Aspergillus fumigatus exhibits terminal transferase activity under physiological conditions.
- AfPolX1 can incorporate ribonucleotides and modified nucleotides, similar to vertebrate TdT.
- The findings suggest template-independent DNA synthesis originated in early eukaryotes.

## Abstract

X-family DNA polymerases (PolXs) perform essential roles in repair and maintenance of the genome. One branch of the PolXs have evolved to function as terminal transferases, extending DNA ends in a template-independent manner, unusual for polymerases. To date, template independence has been shown exclusively in metazoans. We analysed PolXs to determine the phylogenetic evolution of the terminal transferase function in fungal PolXs. We have identified and characterised a PolX from the saprophytic fungus Aspergillus fumigatus, named AfPolX1, that demonstrates inherent terminal transferase ability under physiologically relevant conditions. This is the first report for a fungal terminal deoxynucleotidyl transferase (TdT). Our findings indicate that template-independent ‘creative’ synthesis evolved earlier than previously thought and can be traced as far back as the early Polµ’s of multicellular fungi. We further show that like TdT, AfPolX1 is capable of introducing ribonucleotides and various nucleotides with 2′ ribose modifications, giving credence to the idea that the structural features necessary for PolXs observed promiscuous behaviour during template independence existed in the PolXs of early eukaryotes. Our findings suggest AfPolX1 as a promising candidate for use in enzymatic oligonucleotide synthesis.

Graphical Abstract

## Linked entities

- **Proteins:** POLX1 (DNA polymerase beta-like protein), DNTT (DNA nucleotidylexotransferase)
- **Species:** Aspergillus fumigatus (taxon 746128)

## Full-text entities

- **Genes:** Palm (paralemmin) [NCBI Gene 18483], BRCA1 (BRCA1 DNA repair associated) [NCBI Gene 672] {aka BRCAI, BRCC1, BROVCA1, FANCS, IRIS, PNCA4}, DNTT (DNA nucleotidylexotransferase) [NCBI Gene 281120], LYZ (lysozyme) [NCBI Gene 4069] {aka AMYLD5, LYZF1, LZM}, POLB (DNA polymerase beta) [NCBI Gene 5423], DNTT (DNA nucleotidylexotransferase) [NCBI Gene 1791] {aka TDT}, POLM (DNA polymerase mu) [NCBI Gene 27434] {aka Pol Mu, Tdt-N}, Dntt (deoxynucleotidyltransferase, terminal) [NCBI Gene 21673] {aka Tdt}
- **Diseases:** respiratory disorder (MESH:D012131), TdT. (MESH:D007153), aspergillosis (MESH:D001228)
- **Chemicals:** pyridine (MESH:C023666), dT (MESH:D013936), sodium acetate (MESH:D019346), biotin (MESH:D001710), glycine (MESH:D005998), 2'-F-UTP (-), acrylamide (MESH:D020106), Na+ (MESH:D012964), Trp (MESH:D014364), sugar (MESH:D000073893), Leu (MESH:D007930), cobalt chloride (MESH:C018021), dCTP (MESH:C024107), TTP (MESH:C000628028), salt (MESH:D012492), Sepharose (MESH:D012685), magnesium (MESH:D008274), GTP (MESH:D006160), imidazole (MESH:C029899), CA (MESH:D002118), N2 (MESH:D009584), dTTP (MESH:C024157), Phe (MESH:D010649), SDS (MESH:D012967), HEPES (MESH:D006531), formamide (MESH:C031066), CTP (MESH:D003570), His (MESH:D006639), NaCl (MESH:D012965), 6-carboxyfluorescein (MESH:C024098), H2O (MESH:D014867), dA (MESH:C025953), nucleotide (MESH:D009711), manganese chloride (MESH:C025340), oligonucleotide (MESH:D009841), Co2+ (MESH:D002245), UTP (MESH:D014544), phosphoramidite (MESH:C434331), pyrophosphate (MESH:C107241), fluorine (MESH:D005461), LNAs (MESH:C477371), DTT (MESH:D004229), urea (MESH:D014508), T (MESH:D014316), silica gel (MESH:D058428), acids (MESH:D000143), glycerol (MESH:D005990), ribose (MESH:D012266), nucleoside (MESH:D009705), oxygen (MESH:D010100), FAM (MESH:C031179), tyrosine (MESH:D014443), ATP (MESH:D000255), aspartates (MESH:D001224), ice (MESH:D007053), DCM (MESH:D008752), POCl3 (MESH:C013196), dGTP (MESH:C029603), dATP (MESH:C026600), EDTA (MESH:D004492)
- **Species:** Aspergillus fumigatus var. fumigatus (varietas) [taxon 41122], Paracentrotus lividus (common sea urchin, species) [taxon 7656], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Aspergillus fumigatus (species) [taxon 746128], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Aspergillus fumigatus Af293 (strain) [taxon 330879], Caenorhabditis (genus) [taxon 6237], Ramazzottius varieornatus (species) [taxon 947166], Homo sapiens (human, species) [taxon 9606], Coprinopsis cinerea (species) [taxon 5346], Bacillus (genus) [taxon 55087], Tobacco etch virus (no rank) [taxon 12227], Mus musculus (house mouse, species) [taxon 10090], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Sc [taxon 544725], African swine fever virus (no rank) [taxon 10497], Escherichia coli (E. coli, species) [taxon 562], Drosophila melanogaster (fruit fly, species) [taxon 7227], Schizosaccharomyces pombe (fission yeast, species) [taxon 4896], Deinococcus (genus) [taxon 1298]
- **Mutations:** C for 16-18, Phe/Leu, Leu-Phe, G501, G501H
- **Cell lines:** TEV — Homo sapiens (Human), Transformed cell line (CVCL_0541)

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12828229/full.md

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Source: https://tomesphere.com/paper/PMC12828229