# An elevated level of the mRNA exporter Mex67-Mtr2 in nuclear mRNPs impairs nuclear mRNA export

**Authors:** Nataliia Stefanyshena, Katja Sträßer

PMC · DOI: 10.1093/nar/gkag025 · 2026-01-23

## TL;DR

Too much of the mRNA exporter Mex67-Mtr2 in nuclear mRNPs causes problems in mRNA export, showing the need for precise regulation.

## Contribution

The study reveals that excess Mex67 in mRNPs causes export defects, not the other way around.

## Key findings

- Δhpr1 cells show elevated Mex67 in nuclear mRNPs and impaired mRNA export.
- Overexpression of Nab2 or Yra1 in Δhpr1 cells reduces Mex67 levels and restores export.
- High Mex67 levels in mRNPs are the cause, not the result, of export defects.

## Abstract

In eukaryotes, nuclear messenger RNA (mRNA) export is a crucial step in gene expression, mediated by the conserved mRNA exporter Mex67-Mtr2 in Saccharomyces cerevisiae and NXF1-NXT1 in humans. Mex67-Mtr2 is recruited to the mRNA by the adaptors Hpr1, Nab2, Yra1, and Npl3, which play important yet incompletely understood roles in this process. Here, we uncover that, counterintuitively, an excess of Mex67 in nuclear messenger ribonucleoprotein particles (mRNPs) impairs nuclear mRNA export. Cells lacking Hpr1, which exhibit a nuclear mRNA export defect, show elevated levels of Nab2, Yra1, and Mex67 in nuclear mRNPs. Remarkably, overexpression of either Nab2 or Yra1 in Δhpr1 cells suppresses this export defect and simultaneously decreases the Mex67 level in nuclear mRNPs to those of wild-type cells. Importantly, a nuclear mRNA export defect is not inherently associated with an elevated Mex67 level in nuclear mRNPs, indicating that the increased Mex67 level in nuclear mRNPs of Δhpr1 cells is likely the cause rather than the consequence of the nuclear mRNA export defect. Thus, the precise regulation of the Mex67-Mtr2 level in nuclear mRNPs is essential for efficient nuclear mRNA export.

Graphical Abstract

## Linked entities

- **Genes:** NXF1 (nuclear RNA export factor 1) [NCBI Gene 10482], NXT1 (nuclear transport factor 2 like export factor 1) [NCBI Gene 29107], THOC1 (THO complex subunit 1) [NCBI Gene 9984], NAB2 (NGFI-A binding protein 2) [NCBI Gene 4665], YRA1 (RNA-binding protein YRA1) [NCBI Gene 851988], NAP1L3 (nucleosome assembly protein 1 like 3) [NCBI Gene 4675], NXF1 (nuclear RNA export factor 1) [NCBI Gene 10482], NXT1 (nuclear transport factor 2 like export factor 1) [NCBI Gene 29107]
- **Proteins:** THOC1 (THO complex subunit 1), NAB2 (NGFI-A binding protein 2), YRA1 (RNA-binding protein YRA1), NAP1L3 (nucleosome assembly protein 1 like 3)
- **Species:** Saccharomyces cerevisiae (taxon 4932), Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** MTR2 (Mtr2p) [NCBI Gene 853649], MCM3AP (minichromosome maintenance complex component 3 associated protein) [NCBI Gene 8888] {aka GANP, MAP80, PNRIID, SAC3}, SEM1 (SEM1 26S proteasome subunit) [NCBI Gene 7979] {aka C7orf76, DSS1, ECD, PSMD15, SHFD1, SHFM1}, NPC1 (NPC intracellular cholesterol transporter 1) [NCBI Gene 4864] {aka NPC, POGZ, SLC65A1}, DBP2 (DEAD-box ATP-dependent RNA helicase DBP2) [NCBI Gene 855611], NPL3 (mRNA-binding protein NPL3) [NCBI Gene 852042] {aka MTR13, MTS1, NAB1, NOP3}, MEX67 (Mex67p) [NCBI Gene 855934], TREX2 (three prime repair exonuclease 2) [NCBI Gene 11219], RPS14B (40S ribosomal protein uS11 RPS14B) [NCBI Gene 853248] {aka CRY2}, NAB2 (mRNA-binding protein NAB2) [NCBI Gene 852755], THP2 (Thp2p) [NCBI Gene 856572], ENY2 (ENY2 transcription and export complex 2 subunit) [NCBI Gene 56943] {aka DC6, Sus1, e(y)2}, THOC5 (THO complex subunit 5) [NCBI Gene 8563] {aka C22orf19, Fmip, PK1.3, fSAP79}, NXF1 (nuclear RNA export factor 1) [NCBI Gene 10482] {aka MEX67, TAP}, YEF3 (translation elongation factor EF-3) [NCBI Gene 850951] {aka TEF3}, DDX39B (DExD-box helicase 39B) [NCBI Gene 7919] {aka BAT1, D6S81E, UAP56}, NUP133 [NCBI Gene 100768681], TRNG (tRNA-Gly) [NCBI Gene 4563] {aka MTTG}, RPL9B (60S ribosomal protein uL6 RPL9B) [NCBI Gene 855658], NAP1L3 (nucleosome assembly protein 1 like 3) [NCBI Gene 4675] {aka MB20, NPL3}, YRA1 (RNA-binding protein YRA1) [NCBI Gene 851988] {aka SHE11}, TAF15 (TATA-box binding protein associated factor 15) [NCBI Gene 8148] {aka Npl3, RBP56, TAF2N, TAFII68}, GLI2 (GLI family zinc finger 2) [NCBI Gene 2736] {aka CJS, HPE9, PHS2, THP1, THP2}, RPL28 (60S ribosomal protein uL15 RPL28) [NCBI Gene 852775] {aka CYH2}, CYLD (CYLD lysine 63 deubiquitinase) [NCBI Gene 1540] {aka BRSS, CDMT, CYLD1, CYLDI, EAC, FTDALS8}, CETN3 (centrin 3) [NCBI Gene 1070] {aka CDC31, CEN3}, CHTOP (chromatin target of PRMT1) [NCBI Gene 26097] {aka C10orf77, C1orf77, FL-SRAG, FOP, SRAG, SRAG-3}, DBP5 (ATP-dependent RNA helicase DBP5) [NCBI Gene 854211] {aka RAT8}, CBC2 (nuclear cap-binding protein subunit CBC2) [NCBI Gene 855925] {aka CBP20, MUD13, SAE1}, MFT1 (Mft1p) [NCBI Gene 854940] {aka MFT52}, THOC1 (THO complex subunit 1) [NCBI Gene 9984] {aka DFNA86, HPR1, P84, P84N5}, THOC2 (THO complex subunit 2) [NCBI Gene 57187] {aka AMC7, CXorf3, MRX12, MRX35, THO2, XLID12}, Nab2 [NCBI Gene 100753054], PMA1 (H(+)-exporting P2-type ATPase PMA1) [NCBI Gene 852876] {aka KTI10}, NCBP2 (nuclear cap binding protein subunit 2) [NCBI Gene 22916] {aka CBC2, CBP20, NIP1, PIG55}, NAB2 (NGFI-A binding protein 2) [NCBI Gene 4665] {aka MADER}, CCW12 (Ccw12p) [NCBI Gene 850800], ALYREF (Aly/REF export factor) [NCBI Gene 10189] {aka ALY, ALY/REF, BEF, REF, THOC4}, THO2 (Tho2p) [NCBI Gene 855583] {aka LDB5, RLR1, ZRG13}, ZC3H3 (zinc finger CCCH-type containing 3) [NCBI Gene 23144] {aka SMICL, ZC3HDC3}, GBP2 (guanylate binding protein 2) [NCBI Gene 2634], PABPC1 (poly(A) binding protein cytoplasmic 1) [NCBI Gene 26986] {aka PAB1, PABP, PABP1, PABPC2, PABPL1}, NXT1 (nuclear transport factor 2 like export factor 1) [NCBI Gene 29107] {aka MTR2, P15}, ACT1 (actin) [NCBI Gene 850504] {aka ABY1, END7}, SARNP (SAP domain containing ribonucleoprotein) [NCBI Gene 84324] {aka CIP29, HCC1, HSPC316, THO1}, HPR1 (Hpr1p) [NCBI Gene 851716] {aka TRF1}, ILV5 (ketol-acid reductoisomerase) [NCBI Gene 851069], Pgk1 [NCBI Gene 100689467], FYTTD1 (forty-two-three domain containing 1) [NCBI Gene 84248] {aka UIF}, DDX39A (DExD-box helicase 39A) [NCBI Gene 10212] {aka BAT1, BAT1L, DDX39, DDXL, URH49}
- **Chemicals:** formaldehyde (MESH:D005557), SDS (MESH:D012967), TRIzol (MESH:C411644), sodium deoxycholate (MESH:D003840), salt (MESH:D012492), Sepharose (MESH:D012685), DAPI (MESH:C007293), glucose (MESH:D005947), KOH (MESH:C029943), leu (MESH:D007930), MgCl2 (MESH:D015636), CheLuminate (-), polyvinyl pyrrolidone (MESH:D011205), dT (MESH:D013936), galactose (MESH:D005690), EDTA (MESH:D004492), auxin (MESH:D007210), Triton X-100 (MESH:D017830), TE (MESH:D013691), NP-40 (MESH:C010615), polylysine (MESH:D011107), Poly(A) (MESH:D011061), DTT (MESH:D004229), KCl (MESH:D011189), water (MESH:D014867), NaCl (MESH:D012965), HEPES (MESH:D006531), formamide (MESH:C031066)
- **Species:** Drosophila melanogaster (fruit fly, species) [taxon 7227], Escherichia coli (E. coli, species) [taxon 562], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Caenorhabditis elegans (species) [taxon 6239], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** pGAL1::SUB2 — Homo sapiens (Human), Embryonic stem cell (CVCL_A6V8)

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12828223/full.md

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Source: https://tomesphere.com/paper/PMC12828223