# Multi-omics analysis reveals that ALYREF-mediated m5C modification promotes platinum resistance in ovarian cancer via the NSUN2/ALYREF/LGR4 axis

**Authors:** Shimin Yang, Pengyuan He, Wei Wang, Xianming Xu, Xiaowei Xi, Yi Li

PMC · DOI: 10.1038/s41419-025-08310-8 · 2025-12-05

## TL;DR

This study shows that a specific RNA modification helps ovarian cancer resist platinum drugs, and targeting this process could improve treatment outcomes.

## Contribution

The study identifies a novel m5C-dependent regulatory axis involving ALYREF, NSUN2, and LGR4 that mediates platinum resistance in ovarian cancer.

## Key findings

- ALYREF is a key regulator of platinum resistance in ovarian cancer.
- ALYREF binds to m5C-modified LGR4 mRNA, enhancing its stability and activating Wnt/β-catenin signaling.
- The NSUN2/ALYREF/LGR4 axis mediates platinum resistance through m5C-dependent mechanisms.

## Abstract

Platinum resistance remains a major obstacle to effective treatment and improved prognosis in ovarian cancer. Although 5-methylcytosine (m5C) RNA modification has been implicated in chemoresistance, its precise functional role in ovarian cancer remains unclear. In this study, we integrated RNA-Seq and single-cell transcriptomic data from cisplatin-resistant ovarian cancer cell lines and patient samples, identifying the m5C reader protein ALYREF as a key regulator of platinum resistance. Functional studies using ALYREF and NSUN2 knockdown, overexpression, and mutant constructs—combined with multi-omics analyses (RNA-Seq, m5C-BIS-Seq, and RIP-Seq)—revealed that ALYREF binds to m5C-modified LGR4 mRNA, enhancing its stability and promoting activation of the Wnt/β-catenin signaling pathway. Critically, this regulatory mechanism is dependent on NSUN2-mediated m5C modification of LGR4 mRNA. Together, our findings demonstrate that the NSUN2/ALYREF/LGR4 axis mediates platinum resistance through m5C-dependent stabilization of LGR4 and downstream Wnt signaling activation. Thus, targeting ALYREF may represent a promising strategy to overcome platinum resistance in ovarian cancer.

## Linked entities

- **Genes:** ALYREF (Aly/REF export factor) [NCBI Gene 10189], NSUN2 (NOP2/Sun RNA methyltransferase 2) [NCBI Gene 54888], LGR4 (leucine rich repeat containing G protein-coupled receptor 4) [NCBI Gene 55366]
- **Proteins:** ALYREF (Aly/REF export factor), NSUN2 (NOP2/Sun RNA methyltransferase 2)
- **Diseases:** ovarian cancer (MONDO:0005140)

## Full-text entities

- **Genes:** LGR4 (leucine rich repeat containing G protein-coupled receptor 4) [NCBI Gene 55366] {aka BNMD17, DPSL, GPR48}, ALYREF (Aly/REF export factor) [NCBI Gene 10189] {aka ALY, ALY/REF, BEF, REF, THOC4}, CTNNB1 (catenin beta 1) [NCBI Gene 1499] {aka CTNNB, EVR7, MRD19, NEDSDV, armadillo}, NSUN2 (NOP2/Sun RNA methyltransferase 2) [NCBI Gene 54888] {aka MISU, MRT5, SAKI, TRM4}
- **Diseases:** ovarian cancer (MESH:D010051)
- **Chemicals:** cisplatin (MESH:D002945), m5C (-), 5-methylcytosine (MESH:D044503), Platinum (MESH:D010984)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12827963/full.md

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Source: https://tomesphere.com/paper/PMC12827963