# Large-scale screening of HBV epitopes restricted by multiple prevalent HLA-B/C allotypes and routine detection of HBV-specific T cells in CHB patients

**Authors:** Yandan Wu, Yu Zhao, Ruixue Ji, Pinqing Li, Huijuan Chen, Fangping Yue, Yi Wu, Jie Qiu, Chuanlai Shen

PMC · DOI: 10.3389/fimmu.2025.1717543 · 2026-01-09

## TL;DR

This study identifies new T-cell epitopes for hepatitis B virus and develops a method to measure T-cell responses in chronic hepatitis B patients.

## Contribution

A broad-spectrum epitope library and ELISpot assay for routine detection of HBV-specific T cells in CHB patients.

## Key findings

- 89 novel CD8+ T-cell epitopes were identified from HBV proteins using PBMCs from 250 CHB patients.
- Reactive T-cell counts negatively correlate with serum HBsAg levels but not with HBeAg or ALT levels.
- Combination therapy with NUCs/IFN-α increases reactive HBV-specific T cells more than monotherapy.

## Abstract

In our previous work, a total of 103 CD8+ T-cell epitopes restricted by 13 prevalent HLA-A allotypes in Northeast Asians were validated from the main proteins of hepatitis B virus (HBV). This study aims to further screen the T-cell epitopes restricted by 15 prevalent HLA-B and 14 prevalent HLA-C allotypes and establish a universal assay for counting reactive HBV-specific T cells in patients with chronic hepatitis B (CHB).

CD8+ T-cell epitopes were systematically screened through a combination of in silico prediction, ex vivo co-cultures of peptides with patient-derived peripheral blood mononuclear cells (PBMCs), and peptide competitive binding assays using HLA-B/C transfected cell lines.

A total of 89 novel CD8+ T-cell epitopes were identified from four HBV main proteins using PBMCs from 250 CHB patients. Furthermore, 201 validated CD8+ T-cell epitope peptides restricted by the 13 HLA-A, 15 HLA-B, and 14 HLA-C allotypes were integrated to construct a broad-spectrum epitope peptide library, and by which the ELISpot assay was established followed by clinical testing for 81 CHB patients. The counts of reactive HBV-specific T cells and T cells reactive to each HBV protein (HBsAg-, HBpol-, HBx-, or HBeAg-) in PBMCs showed a negative correlation with serum HBsAg levels and no correlation with HBeAg or ALT levels. NUCs/IFN-α combination elicited significantly more reactive HBV-specific T cells (including those targeting HBsAg, HBpol, HBx, or HBeAg) than NUCs or IFN-α monotherapy.

The proposed method holds great potential for facilitating routine evaluation of HBV-specific CD8+ T cell reactivity in CHB patients.

## Linked entities

- **Proteins:** HOX-2.4 (porcine homeobox)
- **Diseases:** hepatitis B (MONDO:0005344), chronic hepatitis B (MONDO:0005344)

## Full-text entities

- **Genes:** HBeAg [NCBI Gene 944568], HLA-B (major histocompatibility complex, class I, B) [NCBI Gene 3106] {aka AS, B-4901, HLAB}, HBx [NCBI Gene 944566], HLA-A (major histocompatibility complex, class I, A) [NCBI Gene 3105] {aka HLAA}, HLA-C (major histocompatibility complex, class I, C) [NCBI Gene 3107] {aka D6S204, HLA-JY3, HLAC, HLC-C, MHC, PSORS1}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}
- **Diseases:** CHB (MESH:D019694)
- **Species:** Hepatitis B virus (no rank) [taxon 10407], Homo sapiens (human, species) [taxon 9606]

## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12827522/full.md

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Source: https://tomesphere.com/paper/PMC12827522