# HIV-1 derived oligonucleotides induce a type I IFN/STING dependent immune suppression reversible by targeting IFNARI

**Authors:** Cecilia Svanberg, Ravi Prasad Mukku, Sabri O. Besler, Francis R. Hopkins, Christopher Sjöwall, Sofia Nyström, Esaki M. Shankar, Marie Larsson

PMC · DOI: 10.1371/journal.ppat.1013868 · PLOS Pathogens · 2026-01-13

## TL;DR

HIV-1 causes immune dysfunction by triggering type I interferon signaling, which can be reversed by blocking IFNAR1 with anifrolumab.

## Contribution

Identifies a novel mechanism of HIV-induced immune suppression via STING pathway activation and demonstrates reversal using IFNAR1 targeting.

## Key findings

- HIV-derived ssDNA activates STING in dendritic cells, leading to type I IFN production and suppressive T cell expansion.
- Blocking IFNAR1 with anifrolumab restores immune cell function and cytokine secretion in co-cultures.
- Persistent type I IFN signaling contributes to immune dysfunction in HIV-1 infection.

## Abstract

The hallmark of HIV-1 (HIV) infection is the progressive development of multicellular and systemic immune dysfunction, culminating in AIDS. Dendritic cells (DCs) play a pivotal role in HIV dissemination to CD4 + T cells, which are subsequently depleted by the virus leading to HIV disease progression. Type I interferons (IFNs) are critical for host defense during acute infection but contribute to chronic immune activation during the later stages of HIV disease. This persistent activation leads to immune cell exhaustion. HIV can activate type I IFN responses via several pathways, including the STING pathway, which is activated by, e.g., virus-derived oligonucleotides. Here, we investigated the underlying mechanisms creating HIV-mediated immune dysfunction and role of type I IFNs using a DC and T cell co-culture model. HIV exposure in the DC-T cell co-culture promoted the expansion of suppressive T cells with diminished proliferation and effector functions. The impairment required type I IFNs and subsequent IFNα/β receptor signaling, and our data indicate that this was initiated by HIV-derived ssDNA activation of IFI16/cGAS followed by STING signaling in the DCs. Targeting IFNAR1 with anifrolumab restored the immune functions of both DCs and T cells, as well as T cell proliferation and T cell effector functions, including their secretion of IL-2, IFNγ, and granzyme B. Our findings support that the immune impairments existing in untreated or antiretroviral therapy (ART) treated HIV-infected individuals are mediated, if not fully in part by type I IFN’s negative effect on DC and T cells. Therapeutics targeting IFNα/β receptors, such as anifrolumab, hold potential as combination treatment alongside ART, to achieve a more complete immune restoration and contribute to improved quality of life among people living with HIV.

HIV-1 infection causes progressive immune dysfunction that leads to AIDS. Dendritic cells (DCs) play a central role in spreading HIV to CD4 ⁺ T cells, which are subsequently depleted. Type I interferons (IFNs) are vital for antiviral defense during acute infection, but chronic activation of this pathway contributes to immune exhaustion and dysfunction. In this study, we investigated how HIV-1 triggers type I IFN signaling and impairs immune responses using a DC–T cell co-culture model. We found that HIV and HIV derived ss DNA activates the STING pathway in DCs, inducing type I IFN production that drives the expansion of suppressive T cells with reduced proliferation and effector function. Blocking IFN-α/β receptor (IFNAR1) signaling with the monoclonal antibody Anifrolumab restored DC and T cell functions, enhancing proliferation and cytokine secretion. These findings reveal that persistent type I IFN signaling contributes to immune dysfunction in HIV-1 infection and highlight IFNAR-targeting therapies as promising adjuncts to antiretroviral treatment to promote immune restoration.

## Linked entities

- **Genes:** STING1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 340061], IFNAR1 (interferon alpha and beta receptor subunit 1) [NCBI Gene 3454], IFI16 (interferon gamma inducible protein 16) [NCBI Gene 3428], CGAS (cyclic GMP-AMP synthase) [NCBI Gene 115004]
- **Proteins:** IFN1@ (interferon, type 1, cluster), IFNB1 (interferon beta 1), IL2 (interleukin 2), IFNG (interferon gamma)
- **Diseases:** AIDS (MONDO:0012268)

## Full-text entities

- **Genes:** CD38 (CD38 molecule) [NCBI Gene 100511702], MAVS (mitochondrial antiviral signaling protein) [NCBI Gene 57506] {aka CARDIF, IPS-1, IPS1, VISA}, CD83 (CD83 molecule) [NCBI Gene 9308] {aka BL11, HB15}, IRF3 (interferon regulatory factor 3) [NCBI Gene 3661] {aka IIAE7}, IFNAR1 (interferon alpha and beta receptor subunit 1) [NCBI Gene 3454] {aka AVP, CRF2-1, IFN-R-1, IFN-alpha-REC, IFNAR, IFNBR}, CD38 (CD38 molecule) [NCBI Gene 952] {aka ADPRC 1, ADPRC1, cADPR1}, HLA-A (major histocompatibility complex, class I, A) [NCBI Gene 3105] {aka HLAA}, RIGI (RNA sensor RIG-I) [NCBI Gene 23586] {aka DDX58, RIG-I, RIG1, RLR-1, SGMRT2}, IDO1 (indoleamine 2,3-dioxygenase 1) [NCBI Gene 3620] {aka IDO, IDO-1, INDO}, STING1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 340061] {aka ERIS, MITA, MPYS, NET23, SAVI, STING}, APC (APC regulator of Wnt signaling pathway) [NCBI Gene 324] {aka BTPS2, DESMD, DP2, DP2.5, DP3, GS}, IFI16 (interferon gamma inducible protein 16) [NCBI Gene 3428] {aka IFNGIP1, PYHIN2}, TBK1 (TANK binding kinase 1) [NCBI Gene 29110] {aka AIARV, FTDALS4, IIAE8, NAK, T2K}, TRIM3 (tripartite motif containing 3) [NCBI Gene 10612] {aka BERP, HAC1, RNF22, RNF97}, TLR8 (toll like receptor 8) [NCBI Gene 51311] {aka CD288, IMD98, TLR-8, hTLR8}, CXCR4 (C-X-C motif chemokine receptor 4) [NCBI Gene 7852] {aka CD184, D2S201E, FB22, HM89, HSY3RR, LCR1}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, TLR9 (toll like receptor 9) [NCBI Gene 54106] {aka CD289}, IFNB1 (interferon beta 1) [NCBI Gene 3456] {aka IFB, IFF, IFN-beta, IFNB}, SP1 (Sp1 transcription factor) [NCBI Gene 6667], CGAS (cyclic GMP-AMP synthase) [NCBI Gene 115004] {aka C6orf150, D4, MB21D1, h-cGAS}, CD69 (CD69 molecule) [NCBI Gene 397165], IL4 (interleukin 4) [NCBI Gene 3565] {aka BCGF-1, BCGF1, BSF-1, BSF1, IL-4}, IFNAR2 (interferon alpha and beta receptor subunit 2) [NCBI Gene 3455] {aka IFN-R, IFN-R-2, IFN-alpha-REC, IFNABR, IFNARB, IMD45}, IRF9 (interferon regulatory factor 9) [NCBI Gene 10379] {aka IRF-9, ISGF3, ISGF3G, p48}, CTLA4 (cytotoxic T-lymphocyte associated protein 4) [NCBI Gene 397286], IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, CD14 (CD14 molecule) [NCBI Gene 929], CD19 (CD19 molecule) [NCBI Gene 930] {aka B4, CVID3}, PDCD1LG2 (programmed cell death 1 ligand 2) [NCBI Gene 80380] {aka B7DC, Btdc, CD273, PD-L2, PDCD1L2, PDL2}, STAT1 (signal transducer and activator of transcription 1) [NCBI Gene 6772] {aka CANDF7, IMD31A, IMD31B, IMD31C, ISGF-3, STAT91}, IFNA8 (interferon alpha 8) [NCBI Gene 3445] {aka IFN-alphaB}, CCR5 (C-C motif chemokine receptor 5) [NCBI Gene 1234] {aka CC-CKR-5, CCCKR5, CCR-5, CD195, CKR-5, CKR5}, LGALS9 (galectin 9) [NCBI Gene 396972] {aka UATP.I}, NR0B2 (nuclear receptor subfamily 0 group B member 2) [NCBI Gene 8431] {aka SHP, SHP1}, vif (Vif) [NCBI Gene 155459], IFNA2 (interferon alpha 2) [NCBI Gene 3440] {aka IFN-alpha-2, IFN-alphaA, IFNA, IFNA2B, leIF A}, CSF2 (colony stimulating factor 2) [NCBI Gene 1437] {aka CSF, GMCSF}, TNFSF10 (TNF superfamily member 10) [NCBI Gene 8743] {aka APO2L, Apo-2L, CD253, TANCR, TL2, TNLG6A}, TLR7 (toll like receptor 7) [NCBI Gene 51284] {aka IMD74, SLEB17, TLR7-like}, IL2 (interleukin 2) [NCBI Gene 3558] {aka IL-2, TCGF, lymphokine}, TLR3 (toll like receptor 3) [NCBI Gene 7098] {aka CD283, IIAE2, IMD83}, STAT2 (signal transducer and activator of transcription 2) [NCBI Gene 6773] {aka IMD44, ISGF-3, P113, PTORCH3, STAT113}, LGALS9 (galectin 9) [NCBI Gene 3965] {aka HUAT, LGALS9A}, HAVCR2 (hepatitis A virus cellular receptor 2) [NCBI Gene 84868] {aka CD366, HAVcr-2, KIM-3, SPTCL, TIM3, TIMD-3}, CD28 [NCBI Gene 100738615], TREX1 (three prime repair exonuclease 1) [NCBI Gene 11277] {aka AGS1, CRV, DRN3, HERNS, RVCLS}, IFNA4 (interferon alpha 4) [NCBI Gene 3441] {aka IFN-alpha4a, INFA4}, CD86 (CD86 molecule) [NCBI Gene 397441], DKK3 (dickkopf Wnt signaling pathway inhibitor 3) [NCBI Gene 27122] {aka CRRL, REIC, RIG}, CD274 (CD274 molecule) [NCBI Gene 574058] {aka PDL1}, ISG15 (ISG15 ubiquitin like modifier) [NCBI Gene 9636] {aka G1P2, IFI15, IMD38, IP17, UCRP, hUCRP}, CD4 (CD4 molecule) [NCBI Gene 404704], USP18 (ubiquitin specific peptidase 18) [NCBI Gene 11274] {aka ISG43, PTORCH2, UBP43}, IFNA1 (interferon alpha 1) [NCBI Gene 3439] {aka IFL, IFN, IFN-ALPHA, IFN-alphaD, IFNA13, IFNA@}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, TRIM32 (tripartite motif containing 32) [NCBI Gene 22954] {aka BBS11, HT2A, LGMD2H, LGMDR8, TATIP}, CD3E (CD3 epsilon subunit of T-cell receptor complex) [NCBI Gene 397455] {aka CD3}, NRSN1 (neurensin 1) [NCBI Gene 140767] {aka VMP, p24}, NCAM1 (neural cell adhesion molecule 1) [NCBI Gene 4684] {aka CD56, MSK39, NCAM}
- **Diseases:** inflammatory (MESH:D007249), H7N9 influenza infection (MESH:D007251), lupus nephritis (MESH:D008181), AIDS (MESH:D000163), immune dysfunction (MESH:D007154), HIV and SIV infection (MESH:D015658), Cancer (MESH:D009369), SLE (MESH:D008180), systemic sclerosis (MESH:D012595), CMV (MESH:D003586), immune impairment (MESH:D020274), DC (MESH:D054221), infection (MESH:D007239), idiopathic inflammatory myopathies (MESH:D009220), cutaneous lupus erythematosus (MESH:D008178)
- **Chemicals:** ADUS100 (MESH:C000723773), oligonucleotide (MESH:D009841), CO2 (MESH:D002245), NaCl (MESH:D012965), potassium chloride (MESH:D011189), H2O. (MESH:D014867), nucleotides (MESH:D009711), poly I:C (MESH:D011070), HEPES (MESH:D006531), H2SO4 (MESH:C033158), CL075 (MESH:C551788), Anifrolumab (MESH:C582345), gentamicin (MESH:D005839), Tween 20 (MESH:D011136), PVDF (MESH:C024865), H3 (MESH:C012616), 3H (MESH:D014316), 2'3'cyclic-di-AMP (-), biotin (MESH:D001710), thymidine (MESH:D013936), DOTAP (MESH:C070046), cGAMP (MESH:C584311)
- **Species:** Homo sapiens (human, species) [taxon 9606], Qubevirus faecium (species) [taxon 39804], Mus musculus (house mouse, species) [taxon 10090], Brevibacterium sp. AL (species) [taxon 1821050], Human immunodeficiency virus 1 (no rank) [taxon 11676]
- **Cell lines:** DC-T — Mus musculus (Mouse), Conditionally immortalized cell line (CVCL_6B02), -T — Homo sapiens (Human), Esophageal squamous cell carcinoma, Cancer cell line (CVCL_3174), BaL — Mus musculus (Mouse), Mouse lymphoma, Transformed cell line (CVCL_9474), THP1 — Homo sapiens (Human), Childhood acute monocytic leukemia, Cancer cell line (CVCL_0006), THRO-1 — Mus musculus (Mouse), Hybridoma (CVCL_C7RB)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12826489/full.md

## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12826489/full.md

## References

74 references — full list in the complete paper: https://tomesphere.com/paper/PMC12826489/full.md

---
Source: https://tomesphere.com/paper/PMC12826489