# Structural Insights Into the Nuclear Import of Gallid Alphaherpesvirus 1 Large Tegument Protein

**Authors:** Babu Kanti Nath, Crystall M. D. Swarbrick, Reuben Blades, Daryl Ariawan, Ole Tietz, Gualtiero Alvisi, Jade K. Forwood, Subir Sarker

PMC · DOI: 10.1002/mbo3.70216 · MicrobiologyOpen · 2026-01-22

## TL;DR

This study reveals how a key protein from a chicken virus interacts with human proteins to enter the cell nucleus, offering insights for developing antiviral treatments.

## Contribution

The study identifies and characterizes a nuclear localization signal in GaAHV-1 UL36 and its structural interaction with importin α/β1.

## Key findings

- The N-terminal domain of GaAHV-1 UL36 contains a bipartite nuclear localization signal critical for importin α binding.
- Crystal structures and biochemical assays reveal specific residues involved in UL36's interaction with importin α.
- Binding affinities vary among different importin isoforms, suggesting functional specificity in nuclear import.

## Abstract

Gallid alphaherpesvirus 1 (GaAHV‐1), also referred to as infectious laryngotracheitis virus (ILTV), primarily targets the upper respiratory tract of chickens. This infection leads to significant economic setbacks worldwide in the poultry sector, driven by reductions in egg output, weight gain, and increased mortality rates. Even with the broad implementation of vaccination programs, ILTV outbreaks remain a challenge, as vaccine strains can revert to a virulent form under field conditions. This underscores the need to explore targeted therapeutic options, including a deeper understanding of GaAHV‐1's nuclear trafficking mechanisms, critical for viral replication. The herpesvirus large tegument protein UL36 contains N‐terminal nuclear localization signals (NLSs) that are essential for capsid routing to the nuclear pore complex (NPC). However, the mechanisms by which UL36 of GaAHV‐1 mediates nuclear import remain poorly understood. In this study, we identified the NLS of GaAHV‐1 UL36 and elucidated their binding mechanism with human nuclear import proteins. Using high‐resolution crystal structures and quantitative assays, we mapped the specific residues and regions within UL36's N‐terminal domain that facilitate binding to importin (IMP) α. Moreover, we revealed variations in binding affinities among different importin isoforms. Our biochemical and structural analyses demonstrate that the predicted N‐terminal NLS of GaAHV‐1 UL36 is critical for IMPα binding. These findings provide detailed molecular insights into the interaction between the GaAHV‐1 large tegument protein and IMPs, paving the way for the development of targeted antiviral therapies.

The study identifies and characterizes a bipartite nuclear localization signal within the GaAHV‐1 UL36 large tegument protein, revealing its structural interaction with importin α/β1 and confirming a conserved mechanism of nuclear import through biochemical, crystallographic, and mutational analyses.

## Linked entities

- **Proteins:** UL36 (large tegument protein), IMPA1 (inositol monophosphatase 1)
- **Species:** Gallid alphaherpesvirus 1 (taxon 10386), Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** KPNA3 (karyopherin subunit alpha 3) [NCBI Gene 3839] {aka IPOA4, SPG88, SRP1, SRP1gamma, SRP4, hSRP1}, KPNA5 (karyopherin subunit alpha 5) [NCBI Gene 3841] {aka IPOA6, SRP6}, KPNA2 (karyopherin subunit alpha 2) [NCBI Gene 3838] {aka IPOA1, PTAC58, QIP2, RCH1, SRP1-alpha, SRP1alpha}, IGKV2D-24 (immunoglobulin kappa variable 2D-24 (non-functional)) [NCBI Gene 28885] {aka A7, IGKV2D24}, UL42 [NCBI Gene 24271471], IGKV3D-25 (immunoglobulin kappa variable 3D-25 (pseudogene)) [NCBI Gene 28873] {aka A6, IGKV3D25}, Impa2 (inositol monophosphatase 2) [NCBI Gene 114663] {aka 2210415D20Rik, IMP 2, IMPase 2}, KPNA4 (karyopherin subunit alpha 4) [NCBI Gene 3840] {aka IPOA3, QIP1, SRP3}, UL36 [NCBI Gene 3239061], IGKV1D-27 (immunoglobulin kappa variable 1D-27 (pseudogene)) [NCBI Gene 28898] {aka A4, A4a, IGKV1D27}, KPNA1 (karyopherin subunit alpha 1) [NCBI Gene 3836] {aka IPOA5, NPI-1, RCH2, SRP1}, RGPD2 (RANBP2 like and GRIP domain containing 2) [NCBI Gene 729857] {aka NUP358, RANBP2L2, RGP2, ranBP2-like 2}, IGKV2D-23 (immunoglobulin kappa variable 2D-23 (pseudogene)) [NCBI Gene 28886] {aka A8, IGKV2D23}, RAN (RAN, member RAS oncogene family) [NCBI Gene 5901] {aka ARA24, Gsp1, TC4}, KPNA7 (karyopherin subunit alpha 7) [NCBI Gene 402569] {aka IPOA8, OZEMA17}, IMPA2 (inositol monophosphatase 2) [NCBI Gene 3613], IGKV2D-30 (immunoglobulin kappa variable 2D-30) [NCBI Gene 28881] {aka A1, IGKV2D30}, IMPA1 (inositol monophosphatase 1) [NCBI Gene 3612] {aka IMP, IMPA, MRT59}, KPNA6 (karyopherin subunit alpha 6) [NCBI Gene 23633] {aka IPOA7}, LYZ (lysozyme) [NCBI Gene 4069] {aka AMYLD5, LYZF1, LZM}, NPC1 (NPC intracellular cholesterol transporter 1) [NCBI Gene 4864] {aka NPC, POGZ, SLC65A1}, HCFC1 (host cell factor C1) [NCBI Gene 3054] {aka CFF, HCF, HCF-1, HCF1, HFC1, MAHCX}, TCIRG1 (T cell immune regulator 1, ATPase H+ transporting V0 subunit a3) [NCBI Gene 10312] {aka ATP6N1C, ATP6V0A3, Atp6i, OC-116kDa, OC116, OPTB1}, GPHA2 (glycoprotein hormone subunit alpha 2) [NCBI Gene 170589] {aka A2, GPA2, ZSIG51}, UL36 [NCBI Gene 2703357], BPNT2 (3'(2'), 5'-bisphosphate nucleotidase 2) [NCBI Gene 54928] {aka GPAPP, IMP 3, IMP-3, IMPA3, IMPAD1}
- **Diseases:** hemorrhagic (MESH:D006470), ILT (MESH:D003141), tracheitis (MESH:D014136), conjunctivitis (MESH:D003231), infection (MESH:D007239), weight gain (MESH:D015430), respiratory illness (MESH:D012140)
- **Chemicals:** sodium citrate (MESH:D000077559), boric acid (MESH:C032688), GST (MESH:C059555), DMF (MESH:D004126), CEM Liberty Blue Peptide (-), thioanisole (MESH:C093850), TB (MESH:D013725), methanol (MESH:D000432), agarose (MESH:D012685), Amino acids (MESH:D000596), Ahx (MESH:D000614), imidazole (MESH:C029899), SDS (MESH:D012967), TFA (MESH:D014269), diethyl ether (MESH:D004986), nitrogen (MESH:D009584), hydrogen (MESH:D006859), HEPES (MESH:D006531), piperidine (MESH:C032727), water (MESH:D014867), NaCl (MESH:D012965), His (MESH:D006639), DIPEA (MESH:C027070), DTT (MESH:D004229), rink amide resin (MESH:C075825), glycerol (MESH:D005990), acetic acid (MESH:D019342), FITC (MESH:D016650), Coomassie Blue (MESH:C048139), phosphate (MESH:D010710), DIC (MESH:D003606), DCM (MESH:D008752), ethanol (MESH:D000431), Oxyma (MESH:C045419)
- **Species:** Gallus gallus (bantam, species) [taxon 9031], herpesvirus [taxon 39059], Iltovirus (genus) [taxon 180255], Equid alphaherpesvirus 1 (Equine herpesvirus 1, no rank) [taxon 10326], Cacatuid alphaherpesvirus 2 (no rank) [taxon 2604840], Psittacid alphaherpesvirus 1 (no rank) [taxon 50294], Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090], Human alphaherpesvirus 1 (Herpes simplex virus type 1, no rank) [taxon 10298], Gallid alphaherpesvirus 1 (no rank) [taxon 10386]
- **Mutations:** C18-A, K314A, Arg298, K314, Lys317, Arg315, R298A, K317A, phenylalanine-glycine, R315A
- **Cell lines:** GaAHV-1 — Mus musculus (Mouse), Hybridoma (CVCL_C7RB)

## Full text

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## Figures

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## References

79 references — full list in the complete paper: https://tomesphere.com/paper/PMC12826112/full.md

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Source: https://tomesphere.com/paper/PMC12826112