# Development of a novel humanized gut-brain axis model as a tool toward personalized nutrition

**Authors:** Myrto S. Chatzopoulou, Ravi Vumma, Samira Prado, Mathias W. Scharf, Victor Castro-Alves, Ashley N. Hutchinson, Ignacio Rangel, Tatiana M. Marques, Rebecca Wall, Robert J. Brummer, Julia Rode

PMC · DOI: 10.1038/s42003-025-09472-z · 2026-01-21

## TL;DR

A new humanized gut-brain model was developed to study how gut metabolites affect the blood-brain barrier and serotonin metabolism.

## Contribution

A novel ex vivo-in vitro gut-brain axis model was created to explore personalized nutrition effects on the brain.

## Key findings

- Serosal fluids from colonic biopsies do not harm fibroblasts or alter tryptophan transporter expression.
- Serosal fluids show protective effects on fibroblasts under oxidative stress.
- The model supports studying dietary effects on the serotonergic system in health and disease.

## Abstract

Intestinal luminal microbial metabolites affect tryptophan and serotonin metabolism, and cross or modify the blood-brain barrier (BBB). Understanding those mechanisms further necessitates integrated gut-brain axis model systems. Using an ex vivo-in vitro approach, H2O2-stressed or non-stressed human dermal fibroblasts – representing the BBB – are cultured with serosal fluids of healthy or irritable bowel syndrome human colonic biopsies collected from Ussing chamber experiments, after participant’s colon was exposed to butyrate in vivo, fecal fiber fermentation or control supernatant ex vivo. Culturing fibroblasts with serosal fluids does not compromise viability or have cytotoxic effects. Serosal fluids alone do not alter expression of tryptophan-related large amino acid membrane transporter genes and proteins, nor their activity (i.e., tryptophan uptake). However, adding serosal fluids to fibroblasts prior to oxidative stress indicate a protective role. This new model allows investigation of direct effects of serosal content on BBB-representing fibroblasts and is highly promising for more personalized applications.

Proof-of-concept of a humanised gut-brain axis ex vivo model with physiological coupling of intestinal and blood-brain barrier for mechanistical assessment of butyrate- or fiber-rich diets on the serotonergic system in healthy or diseased states.

## Linked entities

- **Chemicals:** butyrate (PubChem CID 104775)
- **Diseases:** irritable bowel syndrome (MONDO:0005052)
- **Species:** Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** IL13 (interleukin 13) [NCBI Gene 3596] {aka IL-13, P600}, SLC7A5 (solute carrier family 7 member 5) [NCBI Gene 8140] {aka 4F2LC, CD98, D16S469E, E16, LAT1, MPE16}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, IL4 (interleukin 4) [NCBI Gene 3565] {aka BCGF-1, BCGF1, BSF-1, BSF1, IL-4}, LAT2 (linker for activation of T cells family member 2) [NCBI Gene 7462] {aka HSPC046, LAB, NTAL, WBSCR15, WBSCR5, WSCR5}, CXCL8 (C-X-C motif chemokine ligand 8) [NCBI Gene 3576] {aka GCP-1, GCP1, IL8, LECT, LUCT, LYNAP}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, SLC3A2 (solute carrier family 3 member 2) [NCBI Gene 6520] {aka 4F2, 4F2HC, 4T2HC, CD98, CD98HC, MDU1}, ALB (albumin) [NCBI Gene 213] {aka FDAHT, HSA, PRO0883, PRO0903, PRO1341}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, SLC7A8 (solute carrier family 7 member 8) [NCBI Gene 23428] {aka LAT2, LPI-PC1}
- **Diseases:** depression (MESH:D003866), Alzheimer's disease (MESH:D000544), inflammation (MESH:D007249), IBS (MESH:D043183), Parkinson's disease (MESH:D010300), anxiety (MESH:D001007), neurodegenerative and psychiatric disorders (MESH:D019636), Cytotoxicity (MESH:D064420)
- **Chemicals:** Acetate (MESH:D000085), penicillin (MESH:D010406), carbon (MESH:D002244), arabinoxylans (MESH:C085118), neutral amino acids (MESH:D021542), Caproate (MESH:C037652), streptomycin (MESH:D013307), EDTA (MESH:D004492), 3H (MESH:D014316), DPBS (MESH:C012939), monosaccharides (MESH:D009005), succinate (MESH:D019802), 3-Methylbutanoic acid (MESH:C008216), xylo-oligosaccharides (MESH:C570991), tricarboxylic acid (MESH:D014233), CO2 (MESH:D002245), 5-HT (MESH:D012701), curcumin (MESH:D003474), BA (MESH:D001647), I3BA (MESH:C014612), pentose (MESH:D010429), I3C (MESH:C016517), ferulic acid (MESH:C004999), xylose (MESH:D014994), ammonium acetate (MESH:C018824), MTBE (MESH:C043243), NaCl (MESH:D012965), LPS (MESH:D008070), H2O2 (MESH:D006861), water (MESH:D014867), FA (MESH:D005227), Butyrate (MESH:D002087), N2 (MESH:D009584), phenol red (MESH:D010637), sodium hydroxide (MESH:D012972), sugars (MESH:D000073893), pyruvate (MESH:D019289), formic acid (MESH:C030544), fiber (MESH:D004043), glucose (MESH:D005947), MPB (MESH:C012415), L-tryptophan (MESH:D014364), methanol (MESH:D000432), AA (MESH:D000596), Valerate (MESH:D014631), AlamarBlue (MESH:C005843), Hexose (MESH:D006601), HC (MESH:D006854), deoxycholic acid (MESH:D003840), kynurenine (MESH:D007737), Propionate (MESH:D011422), L-glutamine (MESH:D005973), isopropanol (MESH:D019840), I3PA (-), acetonitrile (MESH:C032159), polyphenols (MESH:D059808), estradiol (MESH:D004958), kynurenic acid (MESH:D007736), sodium (MESH:D012964), sodium butyrate (MESH:D020148)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Solanum lycopersicum (tomato, species) [taxon 4081]
- **Cell lines:** Caco-2 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0025), ATCC-PCS-201-012 — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_WT12), fibroblasts — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0594)

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12824285/full.md

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Source: https://tomesphere.com/paper/PMC12824285