# Valorisation of spent mushroom substrate by secondary microbial fermentation

**Authors:** P. W. Baker, R. Bragança, A. J. Lloyd, A. Charlton

PMC · DOI: 10.1007/s00253-025-13696-8 · 2026-01-20

## TL;DR

This paper reviews how spent mushroom substrate can be reused through secondary microbial fermentation for various applications like biofuels and fertilizers.

## Contribution

The paper highlights SMS valorisation through secondary fermentation as a novel and emerging research area over the past 14 years.

## Key findings

- Spent mushroom substrate (SMS) contains variable hemicellulose and lignin content based on white-rot fungi used.
- Secondary fermentation of SMS has potential in biofuel production, enzyme generation, and microbial compound formation.
- Larger-scale solid-state fermentation is suggested for SMS valorisation.

## Abstract

Global mushroom production exceeds 45 million tonnes, involving growth on a lignocellulosic substrate. More than 70% of these mushrooms are considered wild mushrooms that are grown on a lignocellulose substrate. At the end of the growth cycle, the remaining spent mushroom substrate (SMS) is considered waste with little value and is often discarded. The limited information available on the fibre content remaining in SMS indicates that different white-rot fungi can result in significant differences in the hemicellulose and lignin content, which in turn may impact the second fermentation step. Secondary fermentation has found uses in the production of biofuels, as a preserved ruminant feed, for enzyme production, in the formation of microbial compounds, and as an amended fertiliser. Finally, achieving secondary fermentation of SMS could involve the development and use of larger-scale solid-state fermentation. This review article has shown that research into secondary fermentation of SMS has been a relatively new field occurring over the past 14 years.

## Full-text entities

- **Diseases:** diabetes (MESH:D003920), SMS (MESH:D009145), cancer (MESH:D009369)
- **Chemicals:** ethanol (MESH:D000431), Colour (MESH:C000656253), phosphate (MESH:D010710), 5-hydroxymethyl furfural (MESH:C008046), methane (MESH:D008697), glycerol (MESH:D005990), heavy metals (MESH:D019216), urea (MESH:D014508), oxygen (MESH:D010100), potassium nitrate (MESH:C023844), carbon dioxide (MESH:D002245), oxytetracycline (MESH:D010118), water (MESH:D014867), NaCl (MESH:D012965), brine (MESH:C017082), sulphuric acid (MESH:C033158), lignocellulose (MESH:C036909), NaOH (MESH:D012972), nitrogen (MESH:D009584), essential fatty acid (MESH:D005228), arachidonic acid (MESH:D016718), glucose (MESH:D005947), polycyclic aromatic hydrocarbons (MESH:D011084), corn syrup (MESH:D000073893), furfural (MESH:D005662), cottonseed (MESH:D003369), nitrate (MESH:D009566), heap (-), butanol (MESH:D000440), hemicellulose (MESH:C007916), ketoconazole (MESH:D007654), lignin (MESH:D008031), phosphorus (MESH:D010758), lactic acid (MESH:D019344), sulphate (MESH:D013431), cellulose (MESH:D002482)
- **Species:** Tuber (truffles, genus) [taxon 36048], Aspergillus niger (species) [taxon 5061], Salmonella enterica subsp. enterica serovar Typhimurium (no rank) [taxon 90371], Pleurotus sp. (species) [taxon 1897414], Bacillus cereus (species) [taxon 1396], Pleurotus citrinopileatus (species) [taxon 98342], Agaricus bisporus (common mushroom, species) [taxon 5341], Trichoderma viride (species) [taxon 5547], Aspergillus oryzae (species) [taxon 5062], Escherichia coli (E. coli, species) [taxon 562], Methanosarcina barkeri (species) [taxon 2208], Tenebrio molitor (yellow mealworm, species) [taxon 7067], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Pleurotus eryngii (species) [taxon 5323], Miscanthus floridulus (species) [taxon 154761], Trichoderma reesei RUT C-30 (strain) [taxon 1344414], Phytophthora capsici (species) [taxon 4784], Agrocybe chaxingu (species) [taxon 84603], Pleurotus djamor (species) [taxon 34470], Heterotermes crinitus (species) [taxon 1367271], Acetivibrio thermocellus (species) [taxon 1515], Homo sapiens (human, species) [taxon 9606], Metarhizium anisopliae (species) [taxon 5530], Agaricus (genus) [taxon 5340], Pythium aphanidermatum (species) [taxon 65070], Glycine max (soybean, species) [taxon 3847], Pleurotus ostreatus (oyster mushroom, species) [taxon 5322], Lentinula edodes (shiitake mushroom, species) [taxon 5353], Acremonium [taxon 1036747], Fungi (kingdom) [taxon 4751], Clostridium acetobutylicum (species) [taxon 1488], Auricularia heimuer (species) [taxon 1579977], Gelatoporia subvermispora (species) [taxon 42742], Pleurotus pulmonarius (species) [taxon 28995], Auricularia auricula-judae (jelly ear fungus, species) [taxon 29892], Penicillium sp. (species) [taxon 5081], Bacillus sp. (in: firmicutes) (species) [taxon 1409], Monascus purpureus (species) [taxon 5098], Oryza sativa (Asian cultivated rice, species) [taxon 4530], Streptomyces albulus [taxon 68570], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Lacticaseibacillus paracasei (species) [taxon 1597], Mortierella sp. (species) [taxon 1715235], Bacillus thuringiensis (species) [taxon 1428], Capsicum (peppers, genus) [taxon 4071], Staphylococcus aureus (species) [taxon 1280], Fusarium sp. (species) [taxon 29916], Lentinus crinitus (species) [taxon 5358], Trametes hirsuta (species) [taxon 5327], Trichoderma sp. (species) [taxon 1715253], Ganoderma lucidum (species) [taxon 5315], Trametes versicolor (turkey-tail fungus, species) [taxon 5325], Cucumis sativus (cucumber, species) [taxon 3659], Trichoderma reesei (species) [taxon 51453], Rhizopus arrhizus (species) [taxon 64495]

## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12823758/full.md

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Source: https://tomesphere.com/paper/PMC12823758