# Dietary duration and composition differentially influence mitochondrial activity and gene expression in a tissue-specific manner in aged rats

**Authors:** Brea J. Ford, Anisha Banerjee, Sarah Ding, Anna A. Caton, Ashley Grothaus, Sara N. Burke, Abbi R. Hernandez

PMC · DOI: 10.1016/j.tma.2025.11.001 · Translational medicine of aging · 2026-01-22

## TL;DR

This study shows that long-term dietary changes like time-restricted feeding and ketogenic diets affect mitochondria differently in various tissues of aged rats.

## Contribution

The study reveals tissue-specific effects of chronic and acute dietary interventions on mitochondrial function and gene expression in aged rats.

## Key findings

- Mitochondrial complex II activity increased in the liver of rats on a chronic ketogenic TRF diet.
- Chronic TRF diets increased Cox5b expression in the liver but reduced complex IV activity in muscle and brain tissue.
- Gene expression related to mitochondrial biogenesis varied between chronic TRF diet groups in the hippocampus.

## Abstract

Mitochondrial dysfunction is a hallmark of aging, affecting multiple systems and tissues, contributing to impairments in function. The resultant decreases in energy availability, along with increased oxidative stress, may be attenuated through diet. Fasting paradigms (including time restricted feeding (TRF)) and ketogenic diets (keto) both influence mitochondrial function, potentially mitigating these effects. However, the duration and modality of dietary intervention required for ameliorating age-related mitochondrial impairments remain unknown. Therefore, this study investigated the effects of a chronically (8–24 months; cTRFc) and acutely (22–24 months; aTRFc) administered TRF diet with standard macronutrients, as well as a chronically (8–24 months) administered TRF with ketogenic macronutrients (cTRFk), on mitochondrial activity and gene expression in aged male rats across tissues (brain, liver, muscle). Despite some synergy across the chronic diet groups, keto and TRF duration influenced mitochondrial function in a tissue- and diet-specific manner. Mitochondrial complex II activity was higher in cTRFk rats within the liver. Mitochondrial complex IV activity was lower in muscle and hippocampal tissue in both chronic TRF-fed groups. Relatedly, expression of the complex IV-related gene Cox2 increased within the CA3 subregion of the hippocampus of cTRFk. In this same region, expression of the mitochondrial biogenesis related gene Pgc1a was increased in cTRFc diet rats only. Within the liver, Cox5b expression increased in both groups of chronic TRF rats. Together, these findings highlight complex, tissue-specific responses to long-term dietary interventions, emphasizing the need for further research to develop targeted nutritional strategies for enhancing mitochondrial function and metabolic health in aging populations.

## Linked entities

- **Genes:** COX2 (cytochrome c oxidase subunit II) [NCBI Gene 4513], PPARGC1A (PPARG coactivator 1 alpha) [NCBI Gene 10891], COX5B (cytochrome c oxidase subunit 5B) [NCBI Gene 1329]
- **Species:** Rattus norvegicus (taxon 10116)

## Full-text entities

- **Genes:** Ca3 (carbonic anhydrase 3) [NCBI Gene 54232] {aka Car3}, Ppargc1a (PPARG coactivator 1 alpha) [NCBI Gene 83516] {aka LRPGC1, PGC-1v, PGCvf, PGCvf-1, PGCvf1, Ppargc1}, COX2 (COXII) [NCBI Gene 26198] {aka COII}, Tfam (transcription factor A, mitochondrial) [NCBI Gene 83474] {aka Mttfa}, Cpox (coproporphyrinogen oxidase) [NCBI Gene 304024], Cs (citrate synthase) [NCBI Gene 170587], Sirt1 (sirtuin 1) [NCBI Gene 309757] {aka Sir2}, Cox5b (cytochrome c oxidase subunit 5B) [NCBI Gene 94194], Sdha (succinate dehydrogenase complex flavoprotein subunit A) [NCBI Gene 157074], Actb (actin, beta) [NCBI Gene 81822] {aka Actx}, COX1 (cytochrome c oxidase subunit I) [NCBI Gene 26195] {aka COI}, Il5 (interleukin 5) [NCBI Gene 24497], Sds (serine dehydratase) [NCBI Gene 25044] {aka RATSDHE1, SDH2, Sdh, Sdhe1, TDH}
- **Diseases:** Alzheimer's disease (MESH:D000544), COVID (MESH:D000086382), impaired function and (MESH:D003072), weight loss (MESH:D015431), inflammatory (MESH:D007249), weight gain (MESH:D015430), obese (MESH:D009765), Mitochondrial dysfunction (MESH:D028361), sarcopenia (MESH:D055948), neurodegenerative disease (MESH:D019636), nutritional ketosis (MESH:D007662), age (MESH:D019588), food restricted (MESH:D002313)
- **Chemicals:** ethanol (MESH:D000431), succinate (MESH:D019802), ATP (MESH:D000255), oxygen (MESH:D010100), carbohydrates (MESH:D002241), 2-mercaptoethanol (MESH:D008623), PBS (MESH:D007854), NADH (MESH:D009243), isoflurane (MESH:D007530), water (MESH:D014867), ketone bodies (MESH:D007657), fumarate (MESH:D005650), TCA (MESH:D014238), fatty acid (MESH:D005227), Trizol (MESH:C411644), glucose (MESH:D005947), 2,6-dichlorindophenol (-), ubiquinone (MESH:D014451), ketone (MESH:D007659), fat (MESH:D005223)
- **Species:** Rattus norvegicus (brown rat, species) [taxon 10116], Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12823141/full.md

## References

55 references — full list in the complete paper: https://tomesphere.com/paper/PMC12823141/full.md

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Source: https://tomesphere.com/paper/PMC12823141