# Expression of sugarcane COBRA-Like genes, ScBC1 and ScBC1L2, increases plant biomass

**Authors:** Samara Cardoso, Júlia Dias Maloste, Leandro Lira Souza, Talia Jacobson, Renato Vicentini, André Ferraz, Cătălin Voiniciuc, Elisson Romanel, Steven A. Whitham, Tatiane da Franca Silva

PMC · DOI: 10.1186/s12870-025-07910-y · BMC Plant Biology · 2025-12-15

## TL;DR

This study shows that sugarcane genes ScBC1 and ScBC1L2 boost plant biomass by influencing cellulose and cell wall development.

## Contribution

The study identifies ScBC1 as a key gene for improving sugarcane biomass through its role in cellulose deposition.

## Key findings

- ScBC1 and ScBC1L2 increase leaf biomass and epidermal cell size in Nicotiana benthamiana.
- Silencing ZmBK2 in maize reduces biomass and cellulose content, altering CesA gene expression.
- ScBC1 is linked to secondary cell wall formation and is a promising target for biomass improvement.

## Abstract

Cellulose is a major determinant of plant biomass yield and quality, with significant industrial relevance. COBRA proteins are established regulators of cellulose deposition and cell wall organization; however, their roles in sugarcane (Saccharum spp.) growth and development remain uncharacterized.

A genome-wide analysis identified 50 sugarcane COBRA genes grouped into 11 unigenes, with ScBC1 (Brittle Culm 1) and ScBC1L2 (Brittle Culm Like 2) highly expressed in stems. Phylogenetic analysis placed ScBC1 with secondary cell wall-associated genes, including maize ZmBK2, while ScBC1L2 clustered with primary cell wall-related genes. Transient expression of ScBC1 and ScBC1L2 in Nicotiana benthamiana increased leaf biomass and epidermal cell size, with ScBC1 having the strongest effect. Virus-induced gene silencing of ZmBK2 in maize reduced biomass, cellulose content, and cell area, and altered the expression of Cellulose Synthase (CesA) genes. Genes related to cell wall remodeling, including Expansin, β-Galactosidase, and Polygalacturonase, were differentially expressed in ZmBK2-silenced leaves, suggesting compensatory responses.

These findings indicate a conserved role of the ScBC1–ZmBK2 subclade in cellulose deposition and cell expansion, identifying ScBC1 as a promising target for improving sugarcane biomass.

The online version contains supplementary material available at 10.1186/s12870-025-07910-y.

## Linked entities

- **Genes:** cesA (carboxylesterase NP) [NCBI Gene 938069], LOC543142 (expansin-A11) [NCBI Gene 543142], PGA4 (polygalacturonase 4) [NCBI Gene 839391]
- **Proteins:** COB (COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family), CESA2 (cellulose synthase A2)
- **Species:** Nicotiana benthamiana (taxon 4100), Zea mays (taxon 4577)

## Full-text entities

- **Genes:** ZmCesA10 [NCBI Gene 542685], alpha-Amylase [NCBI Gene 100283908], LOC542514 (cellulose synthase catalytic subunit 12) [NCBI Gene 542514] {aka CesA12, GRMZM2G142898, ZmCESA12}, Polygalacturonase [NCBI Gene 100284066], beta-galactosidase 1 [NCBI Gene 103638514], bk2 [NCBI Gene 778435], LOC542139 (cellulose synthase 11) [NCBI Gene 542139] {aka GRMZM2G037413, GRMZM2G055795, ZmCESA11, cesa11}, COBL11 (COBRA-like protein 11 precursor) [NCBI Gene 828819] {aka COBRA-like protein 11 precursor, T24A18.60, T24A18_60}, COBL1 (COBRA-like protein 1 precursor) [NCBI Gene 821245] {aka COBRA-like protein 1 precursor, F14P3.14, F14P3_14}, Actin [NCBI Gene 100281811], COB [NCBI Gene 814577], beta-Galactosidase [NCBI Gene 100191631], COBL7 (COBRA-like protein-7 precursor) [NCBI Gene 827298] {aka ARABIDOPSIS THALIANA SEC61 BETA 1, ATSEB1, COBRA-like protein-7 precursor, DL4100C, FCAALL.104, SEB1}, COB (COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family) [NCBI Gene 836213] {aka COBRA, MSL3.40, MSL3_40}
- **Diseases:** viral infection (MESH:D014777), stunted growth (MESH:D006130), cellulose deficiencies (MESH:D007153)
- **Chemicals:** methanol (MESH:D000432), NaCl (MESH:D012965), mannose (MESH:D008358), MgCl2 (MESH:D015636), (1 4)-beta-D-glucan (-), graphite (MESH:D006108), glycerol (MESH:D005990), sugar (MESH:D000073893), phosphate (MESH:D010710), EDTA (MESH:D004492), potassium phosphate (MESH:C013216), nitrogen (MESH:D009584), polysaccharide (MESH:D011134), rhamnose (MESH:D012210), arabinogalactan (MESH:C005653), pectin (MESH:D010368), glucan (MESH:D005936), acetone (MESH:D000096), carbohydrate (MESH:D002241), polymer (MESH:D011108), galacturonic acid (MESH:C007819), starch (MESH:D013213), Triton X-100 (MESH:D017830), monosaccharide (MESH:D009005), sodium azide (MESH:D019810), GPI (MESH:D017261), SYBR Green (MESH:C098022), acetosyringone (MESH:C051667), carborundum (MESH:C517455), water (MESH:D014867), lignin (MESH:D008031), NaF (MESH:D012969), arabinose (MESH:D001089), agarose (MESH:D012685), chloroform (MESH:D002725), sucrose (MESH:D013395), Alcohol (MESH:D000438), SDS (MESH:D012967), Cellulose (MESH:D002482), DTT (MESH:D004229), MES (MESH:C004550), ice (MESH:D007053), sulfuric acid (MESH:C033158), galactose (MESH:D005690), Ribose (MESH:D012266), glucose (MESH:D005947), ethanol (MESH:D000431), hemicellulose (MESH:C007916)
- **Species:** Solanum lycopersicum (tomato, species) [taxon 4081], Saccharum (genus) [taxon 4546], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Mus musculus (house mouse, species) [taxon 10090], Zea mays (maize, species) [taxon 4577], Cunninghamia lanceolata (China fir, species) [taxon 28977], Sorghum bicolor (broomcorn, species) [taxon 4558], Oryza sativa (Asian cultivated rice, species) [taxon 4530], Nicotiana benthamiana (species) [taxon 4100], Foxtail mosaic virus (no rank) [taxon 12179], S. bicolor [taxon 381118], Agrobacterium tumefaciens (species) [taxon 358]
- **Cell lines:** H140 — Homo sapiens (Human), Lung small cell carcinoma, Cancer cell line (CVCL_JZ80), H89 — Mus musculus (Mouse), Hybridoma (CVCL_B7D3)

## Full text

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## Figures

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## References

58 references — full list in the complete paper: https://tomesphere.com/paper/PMC12822275/full.md

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Source: https://tomesphere.com/paper/PMC12822275