# Descriptive and molecular analysis of pineal parenchymal tumors with clinical correlation

**Authors:** Hend Khaled, Amal Mosaab, Hala Taha, Amal Refaat, Nada Ashraf, Mohamed Saad Zaghloul, Mohamed El-Beltagy, Olfat Ahmad, Manal Zamzam, Mark W. Kieran, Ahmed El-Hemaly, Shahenda El-Naggar, Alaa El-Haddad

PMC · DOI: 10.1186/s12885-025-15331-1 · BMC Cancer · 2025-12-06

## TL;DR

This study examines pineal parenchymal tumors, showing how age affects survival and highlighting the need for molecular classification to improve diagnosis and treatment.

## Contribution

The study demonstrates the feasibility of molecular classification in identifying new tumor entities and medulloblastomas within pineal tumors.

## Key findings

- Age was a significant prognostic factor for overall and event-free survival in pineoblastoma patients.
- Molecular classification revealed diverse tumor subtypes, including medulloblastomas, within pineal parenchymal tumors.
- Metastatic status only impacted event-free survival in pineoblastoma cases.

## Abstract

Pineal parenchymal body tumors are rare central nervous system tumors with a variety of presentations ranging from well-differentiated low-grade tumors to undifferentiated highly aggressive tumors. Recent molecular classification has described this heterogeneity, particularly among pineoblastomas (PB) and pineal parenchymal tumor of intermediate differentiation (PPTID).

Our study analyzed 49 patients with pineal parenchymal tumors, including PBs (n = 39), papillary tumors of the pineal region (n = 5), PPTID (n = 2), pineocytoma (n = 1), and trilateral retinoblastoma (n = 2). Descriptive analysis of patients’ characteristics was done in percentages and numbers. Overall survival (OS) and event-free survival (EFS) analysis were evaluated in relation to age and metastatic status for PB cases. Molecular classification was performed using the EPIC methylation array and analyzed by Heidelberg Classifier on 20 cases, of which sixteen were histopathologically diagnosed as PB.

Among PBs, univariate analysis showed that age significantly impacted OS and EFS (p-value = 0.003 and 0.021, respectively), while metastatic status only impacted EFS (p-value = 0.032). In Multivariate analysis, only age was of significance on OS (p-value 0.028). The identified methylation groups were PB-miRNA-1 (n = 10), PB-RB1 (n = 1), retinoblastoma-MYCN activated (n = 1), PPTID KBTBD4-altered (n = 1), papillary tumor of the pineal region (n = 1), medulloblastoma (MB) WNT activated (n = 1), MB non-WNT/SHH (n = 1), CNS embryonal tumor with BRD4-LEUTX fusion (n = 1) and unclassified N/A (n = 3).

Our data identified age as a prognostic factor affecting survival among our PB cohort. We also highlighted the heterogeneity of pineal parenchymal body tumors, necessitating molecular classification for accurate diagnosis and for developing tailored treatment strategies. We demonstrate the feasibility of identifying new entities and MBs within pineal body tumors, thereby supporting the growing evidence that MBs originate in the pineal region.

Not applicable.

The online version contains supplementary material available at 10.1186/s12885-025-15331-1.

## Linked entities

- **Genes:** BRD4 (bromodomain containing 4) [NCBI Gene 23476], LEUTX (leucine twenty homeobox) [NCBI Gene 342900], RB1 (RB transcriptional corepressor 1) [NCBI Gene 5925], MYCN (MYCN proto-oncogene, bHLH transcription factor) [NCBI Gene 4613], KBTBD4 (kelch repeat and BTB domain containing 4) [NCBI Gene 55709]
- **Diseases:** pineoblastoma (MONDO:0003957), pineal parenchymal tumor of intermediate differentiation (MONDO:0006369), retinoblastoma (MONDO:0008380), medulloblastoma (MONDO:0002794)

## Full-text entities

- **Diseases:** pineal parenchymal tumors (MESH:D010871)

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12821833/full.md

## References

2 references — full list in the complete paper: https://tomesphere.com/paper/PMC12821833/full.md

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Source: https://tomesphere.com/paper/PMC12821833