# Epigenetic Regulation and Gene Expression Profiles in Cervical Swabs: Toward Non-Invasive Biomarkers of Cervical Lesion Progression

**Authors:** Ivana Kašubová, Andrea Hornáková, Lucia Kotúľová, Tomáš Rokos, Zuzana Kolková, Andrea Kapinová, Terézia Pribulová, Erik Kozubík, Michal Kalman, Kamil Biringer, Erik Kúdela, Veronika Holubeková

PMC · DOI: 10.3390/epigenomes10010002 · Epigenomes · 2026-01-07

## TL;DR

This study explores how gene expression and epigenetic changes in cervical swabs may help detect cervical lesions without invasive procedures.

## Contribution

The study identifies BCL2 downregulation and microbiome-influenced gene activity as potential non-invasive biomarkers for cervical lesion progression.

## Key findings

- BCL2 expression was significantly reduced across all cervical lesion grades.
- CD8A expression was elevated in HPV-positive low- and high-grade SILs.
- MUC1 expression varied with lesion grade, but no significant DNA methylation differences were found.

## Abstract

Background/Objectives: Cervical cancer is a common malignancy in women worldwide, closely associated with persistent human papillomavirus (HPV) infection. Epigenetic mechanisms, particularly promoter methylation, may contribute to tumour progression. This pilot study aimed to analyse the promoter methylation patterns and gene expression of selected genes (DNMT, BCL2, CDH1, CD8A, MUC1, ALCAM). The goal was to identify associations between promoter hypermethylation, gene expression, and HPV infection in cervical swab specimens obtained from patients with low-grade squamous intraepithelial lesions (SILs), high-grade SILs, or squamous cell carcinomas. Methods: A total of 81 cervical swab samples from Slovak participants were included in the study. DNA methylation and gene expression profiling was performed using real-time PCR (qPCR) and pyrosequencing. Results: BCL2 expression was significantly reduced across all lesion grades. CD8A expression was slightly elevated in low- and high-grade SILs, particularly in HPV-positive samples. MUC1 showed variability with lesion grade. No statistically significant differences in DNA methylation were observed across groups stratified by HPV status, community state type, and lesion grade. Conclusions: Our findings suggest that BCL2 downregulation and gene activity variability influenced by the vaginal microbiome may play a role in cervical lesion progression. These results highlight potential non-invasive biomarkers for monitoring cervical lesions.

## Linked entities

- **Genes:** DNMT1 (DNA methyltransferase 1) [NCBI Gene 1786], BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596], CDH1 (cadherin 1) [NCBI Gene 999], CD8A (CD8 subunit alpha) [NCBI Gene 925], MUC1 (mucin 1, cell surface associated) [NCBI Gene 4582], ALCAM (activated leukocyte cell adhesion molecule) [NCBI Gene 214]
- **Diseases:** cervical cancer (MONDO:0002974)
- **Species:** Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** MUC1 (mucin 1, cell surface associated) [NCBI Gene 4582] {aka ADMCKD, ADMCKD1, ADTKD2, CA 15-3, CD227, Ca15-3}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, ALCAM (activated leukocyte cell adhesion molecule) [NCBI Gene 214] {aka CD166, MEMD}, DNMT1 (DNA methyltransferase 1) [NCBI Gene 1786] {aka ADCADN, AIM, CXXC9, DNMT, HSN1E, MCMT}, BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596] {aka Bcl-2, PPP1R50}, CDH1 (cadherin 1) [NCBI Gene 999] {aka Arc-1, BCDS1, CD324, CDHE, ECAD, LCAM}
- **Diseases:** lesion (MESH:D009059), Cervical cancer (MESH:D002583), Cervical Lesion (MESH:D002575), malignancy (MESH:D009369), SILs (MESH:D000081483), HPV infection (MESH:D030361), squamous cell carcinomas (MESH:D002294)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12821634/full.md

## References

73 references — full list in the complete paper: https://tomesphere.com/paper/PMC12821634/full.md

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Source: https://tomesphere.com/paper/PMC12821634