# Soil fertility and rhizosphere microbiome affecting hydroxysafflor yellow A accumulation in safflower

**Authors:** Wenjie Shen, Wanting Yang, Shuwei Qin, Yang Liu, Guojun Li, Xia Zhang, Mingqiang Bao, Yaqian Lu, Kexin Sun, Wei Ma, Hongbin Li, Asigul Ismayil, Aiping Cao

PMC · DOI: 10.3389/fmicb.2025.1738669 · Frontiers in Microbiology · 2026-01-07

## TL;DR

This study shows that soil fertility and rhizosphere microbes influence the accumulation of a key medicinal compound in safflower.

## Contribution

The study identifies specific soil nutrients and microbial groups linked to hydroxysafflor yellow A accumulation in safflower.

## Key findings

- Safflower stigmas from high-altitude sites had significantly higher hydroxysafflor yellow A levels.
- Available phosphorus, total nitrogen, and organic matter were key drivers of hydroxysafflor yellow A accumulation.
- Actinobacteria, Proteobacteria, and Ascomycota dominated the rhizosphere microbial communities.

## Abstract

Safflower (Carthamus tinctorius L.) is a prized medicinal species whose therapeutic value hinges on the abundance of bioactive metabolites. Accumulation of these metabolites are influenced by a range of environmental and edaphic factors, including soil physicochemical parameters, extracellular enzyme activities, composition and function of rhizosphere microbiome. However, how these factors individually and synergistically orchestrate the biosynthesis, transport, and ultimate storage of pharmaceutically active compounds within Safflower tissues remains unknown.

Here, high-throughput amplicon sequencing coupled with comprehensive physiological profiling was employed to investigate soil characteristics, enzyme activities, and rhizosphere microbial communities of safflower across 36 soil samples collected at two distinct altitudes and two growth stages.

The effective component content was detected in 18 samples, and our results revealed that the safflower stigmas from the high- altitude site (YM) contained significantly elevated levels of hydroxysafflor yellow A (HSYA) compared to those from the lowland site (YF). Soils at the YM site exhibited markedly higher fertility, with available phosphorus, total nitrogen, and organic matter identified as key drivers of HSYA accumulation. Both sites showed high diversity and abundance in rhizosphere microbial communities, with Actinobacteria and Proteobacteria dominating the bacterial communities, and Ascomycota being the predominant fungal phylum.

Taken together, our findings show that soil properties, microbial communities, and climatic conditions work interactively to influence the buildup of bioactive compounds in safflower. These insights suggest that precise management of soil nutrients and the rhizosphere microbiome can improve medicinal safflower quality.

## Linked entities

- **Chemicals:** hydroxysafflor yellow A (PubChem CID 6443665)
- **Species:** Carthamus tinctorius (taxon 4222)

## Full-text entities

- **Chemicals:** phosphorus (MESH:D010758), nitrogen (MESH:D009584), HSYA (MESH:C085278)
- **Species:** Carthamus tinctorius (safflower, species) [taxon 4222], Ascomycota (ascomycete fungi, phylum) [taxon 4890], Pseudomonadota (proteobacteria, phylum) [taxon 1224]

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12821326/full.md

## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12821326/full.md

## References

60 references — full list in the complete paper: https://tomesphere.com/paper/PMC12821326/full.md

---
Source: https://tomesphere.com/paper/PMC12821326