# CDKL5 regulates the initiation of retrograde axonal transport through CLIP170–dynactin complex formation

**Authors:** Serena Baldin, Clara Carmone, Giorgia Valetti, Roberta De Rosa, Isabella Barbiero

PMC · DOI: 10.1111/febs.70230 · The Febs Journal · 2025-08-23

## TL;DR

This paper shows how CDKL5 helps start retrograde transport in neurons by activating CLIP170 to bind with dynactin, and how its absence causes transport issues linked to a neurodevelopmental disorder.

## Contribution

The study reveals a novel mechanism by which CDKL5 regulates retrograde axonal transport via CLIP170–dynactin complex formation.

## Key findings

- CDKL5 activates CLIP170, enabling it to bind microtubules and recruit dynactin for retrograde transport.
- Lack of CDKL5 leads to inactive CLIP170, impairing retrograde cargo trafficking in neurons.
- The findings provide new insights into the molecular basis of CDKL5 deficiency disorder.

## Abstract

Cyclin‐dependent kinase‐like 5 (CDKL5) is a serine–threonine kinase implicated in regulating microtubule (MT) dynamics. Mutations in CDKL5 are associated with a rare neurodevelopmental disease called CDKL5 deficiency disorder (CDD), which is characterized by early‐onset seizures and intellectual disabilities. Microtubule (MT)‐related functions of CDKL5 are in part correlated with its interaction with MT‐associated proteins, such as CAP‐Gly domain‐containing linker protein 1 [CLIP1; also known as cytoplasmic linker protein 170 alpha‐2 (CLIP170)]. CLIP170 is a MT plus‐end tracking protein that, once activated, can bind MTs and other proteins, favoring MT dynamics. Importantly, we have previously shown that CLIP170 is inactive in the absence of CDKL5, thus hindering MT functions. One of the best‐characterized interactors of CLIP170 is dynactin, a multisubunit complex that binds the motor protein dynein. In particular, in neurons, active CLIP170 localizes to MTs in the axonal periphery, where it serves as a docking site for the interaction with dynactin, which in turn recruits dynein and various cargos, favoring the initiation of retrograde transport toward the neuronal soma. Here, we demonstrated that CLIP170–dynactin complex formation is impaired in the absence of CDKL5, thus leading to defective retrograde cargo trafficking. Overall, our findings expand the knowledge on the molecular mechanisms underlying neuronal transport and provide novel information regarding the etiopathogenesis of CDD.

Activation of CLIP170 by CDKL5 in wild‐type (WT) cells promotes its open conformation and association with tyrosinated microtubule (MT) plus‐ends (+), where it works as a docking site to recruit the dynactin–dynein–cargo complex, promoting the initiation of retrograde transport. In knock‐out (KO) neurons, CLIP170 is mainly present in a closed (inactive) conformation that impedes its MT‐binding and recruitment of the dynactin–dynein complex, hindering retrograde transport initiation.

## Linked entities

- **Genes:** CDKL5 (cyclin dependent kinase like 5) [NCBI Gene 6792], CLIP1 (CAP-Gly domain containing linker protein 1) [NCBI Gene 6249]
- **Proteins:** CDKL5 (cyclin dependent kinase like 5), CLIP1 (CAP-Gly domain containing linker protein 1), DCTN2-p50 (dynactin subunit 2), Dhc64C (Dynein heavy chain 64C)
- **Diseases:** CDKL5 deficiency disorder (MONDO:0100039), CDD (MONDO:0009031)

## Full-text entities

- **Genes:** CLIP1 (CAP-Gly domain containing linker protein 1) [NCBI Gene 6249] {aka CLIP, CLIP-170, CLIP170, CYLN1, RSN}, CDKL5 (cyclin dependent kinase like 5) [NCBI Gene 6792] {aka CFAP247, DEE2, EIEE2, ISSX, STK9}
- **Diseases:** CDD (MESH:C538124), neurodevelopmental disease (MESH:D004194), intellectual disabilities (MESH:D008607), seizures (MESH:D012640)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12820607/full.md

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12820607/full.md

## References

44 references — full list in the complete paper: https://tomesphere.com/paper/PMC12820607/full.md

---
Source: https://tomesphere.com/paper/PMC12820607