# Genomic sequencing identifies tuberculosis cluster in inner-city Sydney boarding house, Australia, 2022

**Authors:** Eunice Stiboy, Standish Rigava, Anthea Katelaris, Vicky Sheppeard, Anna Glynn-Robinson, Yasmeen Al-Hindawi, Hazel Goldberg, Kerrie Shaw, Vitali Sintchenko, Elena Martinez, Taryn Crighton, Ellen Donnan, Anthony Byrne

PMC · DOI: 10.5365/wpsar.2025.16.4.1153 · Western Pacific Surveillance and Response Journal : WPSAR · 2025-12-03

## TL;DR

Genomic sequencing helped identify a tuberculosis cluster in a Sydney boarding house, revealing transmission risks and the need for improved contact screening.

## Contribution

The study demonstrates how genomic sequencing can detect TB transmission in complex urban housing settings.

## Key findings

- Four residents were identified with TB disease, three of whom were genomically linked.
- Only 41% of 91 contacts completed TB screening, highlighting challenges in engagement.
- Prolonged TB exposure in the boarding house likely facilitated transmission in communal areas.

## Abstract

In 2022, the New South Wales TB Program was notified of genomically clustered Mycobacterium tuberculosis isolates from two smear-positive tuberculosis (TB) patients diagnosed 3 months apart. Secondary investigations found they resided in the same Sydney boarding house. The objective of this study was to investigate this cluster and conduct active case finding among contacts.

We conducted a site visit to understand transmission risk, reviewed patient histories, performed a risk assessment and conducted on-site TB contact screening, including interferon-gamma release assay testing. Long-term residents were also screened via chest X-ray. Past residents were referred to local TB services.

Four residents with TB disease were identified, three of whom were genomically linked to the cluster. The exposure period in the boarding house was determined to be from January 2021 to September 2022. All residents and staff were considered contacts requiring screening. Of the 91 contacts identified, 37 (41%) completed screening, including 20 (22%) who attended the on-site clinic. Among those screened, one resident with TB disease (patient 4) and three residents and one staff member with TB infection were identified.

This cluster highlights the role of genomic sequencing in detecting TB transmission. The first three patients were infectious for prolonged periods before diagnosis, likely facilitating transmission in communal areas. In multidwelling buildings with TB exposures, contact screening of all residents may be required when prolonged exposures are found. Strategies to increase screening completion should be further explored.

## Linked entities

- **Diseases:** tuberculosis (MONDO:0018076), TB (MONDO:0018076)
- **Species:** Mycobacterium tuberculosis (taxon 1773)

## Full-text entities

- **Genes:** IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}
- **Diseases:** smear (MESH:D016369), TB (MESH:D014376)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mycobacterium tuberculosis (species) [taxon 1773]

## Full text

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## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12820556/full.md

## References

18 references — full list in the complete paper: https://tomesphere.com/paper/PMC12820556/full.md

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Source: https://tomesphere.com/paper/PMC12820556