# Structural brain MRI abnormalities in SCN1A-, SCN2A-, SCN3A-, and SCN8A-related epilepsies: a cohort study

**Authors:** Daewoong Ahn, Daehyun Kim, Hyeon Deok Sang, Heeseung Cho, Ara Ko, Na-Young Shin, Hoon-Chul Kang, Joon Soo Lee, Lip-Yuen Teng, Se Hee Kim

PMC · DOI: 10.3389/fneur.2025.1706132 · Frontiers in Neurology · 2026-01-07

## TL;DR

This study finds that structural MRI brain abnormalities are common in children with certain genetic epilepsies, especially those linked to SCN2A and SCN8A genes.

## Contribution

The study reveals that MRI abnormalities are more prevalent in SCN2A- and SCN8A-related epilepsies than previously thought.

## Key findings

- MRI abnormalities were found in 37.4% of patients with SCN1A-, SCN2A-, SCN3A-, or SCN8A-related epilepsy.
- SCN2A-related epilepsy showed the highest rate of MRI abnormalities (70.6%), including atrophy and white matter issues.
- MRI findings can help in diagnosing and predicting outcomes in voltage-gated sodium channel-related epilepsies.

## Abstract

To characterize the prevalence and patterns of structural brain magnetic resonance imaging (MRI) abnormalities in children with genetically confirmed SCN1A-, SCN2A-, SCN3A-, or SCN8A-related epilepsy and to identify genotype-specific imaging features.

We retrospectively analyzed brain MRI findings from a single-center cohort of 139 pediatric patients with pathogenic variants of SCN1A (n = 114), SCN2A (n = 17), SCN3A (n = 1), or SCN8A (n = 7), evaluated between 2010 and 2023. MRI abnormalities were categorized using a standardized classification framework and compared across the genotypes.

MRI abnormalities were identified in 52 of the 139 patients (37.4%). The most common findings were atrophy (21.6%), hippocampal abnormalities (6.5%), white matter signal abnormalities (5.0%) and hypoxic–ischemic encephalopathy (3.6%). Abnormalities were most frequent in the SCN2A (70.6%) group, followed by the SCN8A (42.9%) and SCN1A (31.6%) groups; one patient with SCN3A-related epilepsy also exhibited abnormal findings. In SCN1A-related epilepsies, the most common abnormalities were cerebral atrophy (15.8%) and hippocampal abnormalities (6.1%). In SCN2A-related epilepsies, common abnormalities included atrophy (58.8%), white matter signal abnormalities (17.6%), hypoxic–ischemic encephalopathy (11.8%) and malformations of cortical development (11.8%). In SCN8A-related epilepsies, common findings included atrophy (28.6%), hippocampal abnormalities (14.3%), and white matter signal abnormalities (14.3%). One patient with SCN3A-related epilepsy exhibited vascular abnormalities.

Contrary to earlier assumptions, structural MRI abnormalities are common in SCN-related epilepsies, particularly in SCN2A-and SCN8A-related epilepsies. MRI may aid in the diagnosis, phenotypic stratification, and prognostication of genetic epilepsy involving voltage-gated sodium channels.

## Linked entities

- **Genes:** SCN1A (sodium voltage-gated channel alpha subunit 1) [NCBI Gene 6323], SCN2A (sodium voltage-gated channel alpha subunit 2) [NCBI Gene 6326], SCN3A (sodium voltage-gated channel alpha subunit 3) [NCBI Gene 6328], SCN8A (sodium voltage-gated channel alpha subunit 8) [NCBI Gene 6334]
- **Diseases:** epilepsy (MONDO:0005027)

## Full-text entities

- **Genes:** SCN2A (sodium voltage-gated channel alpha subunit 2) [NCBI Gene 6326] {aka BFIC3, BFIS3, BFNIS, DEE11, EA9, EIEE11}, SCN3A (sodium voltage-gated channel alpha subunit 3) [NCBI Gene 6328] {aka DEE62, EIEE62, FFEVF4, NAC3, Nav1.3}, SCN1A (sodium voltage-gated channel alpha subunit 1) [NCBI Gene 6323] {aka DEE6, DEE6A, DEE6B, DRVT, EIEE6, FEB3}, SCN8A (sodium voltage-gated channel alpha subunit 8) [NCBI Gene 6334] {aka BFIS5, CERIII, CIAT, DEE13, EIEE13, MED}
- **Diseases:** malformations of cortical development (MESH:D054220), hippocampal abnormalities (MESH:D000092223), hypoxic-ischemic encephalopathy (MESH:D020925), vascular abnormalities (MESH:D014652), epilepsies (MESH:D004827), white matter signal abnormalities (MESH:C566796), atrophy (MESH:D001284), MRI abnormalities (MESH:C564543)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

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## References

23 references — full list in the complete paper: https://tomesphere.com/paper/PMC12819171/full.md

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Source: https://tomesphere.com/paper/PMC12819171