# Disruption of a six-nucleotide miRNA motif improves PKD1 dosage and ameliorates polycystic kidney disease

**Authors:** Ronak Lakhia, Chunzi Song, Laurence Biggers, Maggie Zumwalt, Jesus Alvarez, Arvind Somasundaram, Harini Ramalingam, Patricia Cobo-Stark, Vishal Patel

PMC · DOI: 10.1093/nar/gkaf1538 · Nucleic Acids Research · 2026-01-21

## TL;DR

Scientists disrupted a six-nucleotide miRNA motif to increase PKD1 protein levels and reduce kidney cysts in a mouse model of polycystic kidney disease.

## Contribution

The study identifies a minimal six-nucleotide miR-17 motif in PKD1's 3′UTR and demonstrates its disruption as a therapeutic strategy for ADPKD.

## Key findings

- Disrupting the six-nucleotide miR-17 motif in PKD1's 3′UTR stabilizes Pkd1 mRNA and increases PC1 protein levels.
- A steric-blocking oligonucleotide targeting the motif reduces cyst growth and preserves kidney function in mouse models.
- The oligonucleotide treatment also mitigates cystic events in patient-derived ADPKD cells.

## Abstract

Disrupting microRNA interactions to restore protein expression from haploinsufficient genes offers a promising precision-therapy strategy for monogenic disorders. PKD1 heterozygosity underlies autosomal dominant polycystic kidney disease (ADPKD), a disorder affecting nearly 12 million people worldwide, where reduced PKD1 dosage drives progressive cyst formation and kidney failure. We previously identified a 55-bp cis-repressive element in the PKD1 3′UTR. Here, we define a six-nucleotide miR-17 seed match within this element that is sufficient to reproduce PKD1 repression. In vivo base substitution of this motif stabilizes Pkd1 messenger RNA and increases polycystin-1 (PC1) protein levels, producing a robust reduction in cyst growth and preservation of kidney function in mouse models. To therapeutically recapitulate this effect, we developed a steric-blocking oligonucleotide that occludes the motif, stabilizes PKD1 transcript levels, increases PC1 expression, and mitigates cyst-pathogenic events in both murine and patient-derived ADPKD cells. Together, these findings establish a minimal, targetable cis-regulatory motif and provide proof of concept for oligonucleotide-mediated PKD1 derepression, while offering a potentially generalizable strategy to restore other haploinsufficient genes.

Graphical Abstract

## Linked entities

- **Genes:** PKD1 (polycystin 1, transient receptor potential channel interacting) [NCBI Gene 5310]
- **Proteins:** KRT16 (keratin 16)
- **Diseases:** autosomal dominant polycystic kidney disease (MONDO:0004691), ADPKD (MONDO:0004691)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** PKD1 (polycystin 1, transient receptor potential channel interacting) [NCBI Gene 5310] {aka PBP, PC1, Pc-1, TRPP1, eliosin}, MIR17 (microRNA 17) [NCBI Gene 406952] {aka MIR17-5p, MIR91, MIRN17, MIRN91, hsa-mir-17, miR-17}
- **Diseases:** kidney failure (MESH:D051437), ADPKD (MESH:D016891), cyst formation (MESH:D058426), cyst (MESH:D003560), monogenic disorders (MESH:D009358), polycystic kidney disease (MESH:D007690)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12818905/full.md

## References

26 references — full list in the complete paper: https://tomesphere.com/paper/PMC12818905/full.md

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Source: https://tomesphere.com/paper/PMC12818905