# Improving micromorphological analysis with CNN-based segmentation of flint/obsidian, bone and charcoal

**Authors:** Rafael Arnay, Pedro García-Villa, Javier Hernández-Aceituno, Sara Rueda-Saiz, Carolina Mallol, Przemysław Mroczek, Przemysław Mroczek, Przemysław Mroczek, Przemysław Mroczek

PMC · DOI: 10.1371/journal.pone.0340353 · PLOS One · 2026-01-20

## TL;DR

This paper introduces a deep learning tool that improves the accuracy and objectivity of identifying archaeological materials in micromorphological analysis.

## Contribution

A CNN-based tool is developed for automatic segmentation of flint/obsidian, bone, and charcoal in archaeological thin sections.

## Key findings

- A U-Net with InceptionV4 encoder achieved high IoU scores for material segmentation.
- The model accurately classified the relative abundance of each material with high balanced accuracies.

## Abstract

The quantification and identification of components in archaeological micromorphology remain subjective and challenging, particularly for early-career researchers. To address this, we developed a deep learning tool for the automatic segmentation of three materials commonly found in Palaeolithic contexts and thin sections: bone, charcoal, and lithic fine-grained debitage (flint and obsidian). Using high-resolution photomicrographs of 57 thin sections in plane-polarised and cross-polarised light, we trained and evaluated state-of-the-art convolutional neural networks (CNNs) for material segmentation. The best-performing configuration, a U-Net with an InceptionV4 encoder, achieved mean intersection over union (IoU) scores of 0.96 for flint/obsidian, 0.80 for bone, and 0.82 for charcoal. The models also classified the relative abundance of each material with balanced accuracies of 0.99 for flint/obsidian, 0.92 for bone, and 0.85 for charcoal. These results demonstrate the potential of deep learning to enhance objectivity, accuracy, and reproducibility in archaeological micromorphology, providing a valuable resource for future geoarchaeological research.

## Full-text entities

- **Chemicals:** charcoal (MESH:D002606)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12818656/full.md

## References

36 references — full list in the complete paper: https://tomesphere.com/paper/PMC12818656/full.md

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Source: https://tomesphere.com/paper/PMC12818656