# Retrograde signaling is required for Slm35-mediated negative regulation of mitophagy in yeast

**Authors:** Hilario Ruelas-Ramírez, Ariann E. Mendoza-Martínez, P. Abril Medina-Flores, Soledad Funes

PMC · DOI: 10.1242/bio.062106 · Biology Open · 2026-01-07

## TL;DR

This study shows that the yeast protein Slm35 helps control mitophagy by using retrograde signaling, ensuring mitochondria are properly maintained.

## Contribution

Slm35 is identified as a novel negative regulator of mitophagy acting via the RTG pathway, independent of known mechanisms.

## Key findings

- Slm35 is a soluble mitochondrial matrix protein that negatively regulates mitophagy.
- Slm35 modulates mitophagy through the RTG pathway, independent of Atg32 processing or membrane potential.
- Slm35 is essential for dynamic RTG pathway regulation during mitophagy-inducing conditions.

## Abstract

Mitophagy is essential for mitochondrial quality control, selectively removing damaged or superfluous mitochondria to maintain cellular health and metabolic homeostasis. While positive regulators of mitophagy are relatively well characterized, the mechanisms governing its downregulation remain less understood. In this study, we investigate the role of Saccharomyces cerevisiae Slm35 – a protein previously involved in oxidative stress response – in the regulation of mitophagy. We discovered that Slm35 is a soluble mitochondrial matrix protein and functions as a novel negative regulator of mitophagy and the mitochondrial retrograde (RTG) signaling pathway. Our results show that Slm35 modulates mitophagy through the RTG pathway, independently of Atg32 proteolytic processing by Yme1 or mitochondrial membrane potential dissipation. Notably, Slm35 is crucial for the dynamic regulation of the RTG pathway in mitophagy-inducing conditions. These findings highlight the importance of Slm35 in fine-tuning mitochondrial quality control in response to metabolic cues and suggest a critical role for dynamic RTG pathway regulation in mitophagy control.

Summary: This study describes how the mitochondrial protein Slm35 works as a negative regulator of mitophagy, acting through retrograde signaling to the nucleus, and highlights its role in fine-tuning mitochondrial quality control.

## Linked entities

- **Genes:** AIM25 (Aim25p) [NCBI Gene 853563], ATG32 (mitophagy protein ATG32) [NCBI Gene 854660], YME1 (i-AAA protease YME1) [NCBI Gene 856135]
- **Proteins:** AIM25 (Aim25p), ATG32 (mitophagy protein ATG32), YME1 (i-AAA protease YME1)
- **Species:** Saccharomyces cerevisiae (taxon 4932)

## Full-text entities

- **Genes:** ATG32 (mitophagy protein ATG32) [NCBI Gene 854660] {aka ECM37}, YME1 (i-AAA protease YME1) [NCBI Gene 856135] {aka OSD1, YTA11}
- **Species:** Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932]

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12817334/full.md

## References

67 references — full list in the complete paper: https://tomesphere.com/paper/PMC12817334/full.md

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Source: https://tomesphere.com/paper/PMC12817334