# Unveiling tumor senescence-driven prognostic heterogeneity via MALISS in stage II/III colorectal cancer

**Authors:** Xinyu Liu, Bingyao Liu, Yuhao Tong, Xingyu Zhu, Yaodong Sang, Feng Gao, Xiangyun Niu, Youyong Tang, Kang Xu, Hao Chen, Wei Chong, Leping Li

PMC · DOI: 10.3389/fimmu.2025.1744719 · Frontiers in Immunology · 2026-01-06

## TL;DR

A new machine learning model called MALISS helps predict outcomes in colorectal cancer patients by analyzing tumor senescence and immune aging.

## Contribution

A novel machine learning-based immunosenescence signature (MALISS) for risk stratification in stage II/III colorectal cancer.

## Key findings

- MALISS stratified patients into high- and low-risk groups with distinct progression-free survival.
- NR1D2 was identified as a key gene promoting tumor migration through cellular senescence.
- The high-risk group showed a unique mutational landscape and altered tumor microenvironment.

## Abstract

Prognostic heterogeneity in stage II/III colorectal cancer (CRC) challenges clinical management, yet effective prognostic stratification is still lacking. To address this, we developed a novel machine learning-based signature focused on immunosenescence.

This study developed a machine learning-based immunosenescence signature (MALISS) using transcriptomic data from 1296 patients. The final 30-gene model was derived via a CoxBoost-Lasso algorithm and validated across multiple independent cohorts.

The MALISS signature effectively stratified patients into high- and low-risk groups with distinct progression-free survival. Functional analysis identified NR1D2 as a key gene promoting tumor migration through cellular senescence. The high-risk group was characterized by a unique mutational landscape, an altered tumor microenvironment, and differential drug sensitivity. Furthermore, a prognostic nomogram integrating MALISS with clinical biomarkers demonstrated improved predictive performance.

MALISS serves as a robust tool for risk stratification and provides valuable insights into tumor biology, offering a promising approach to address prognostic heterogeneity in stage II/III CRC.

## Linked entities

- **Genes:** NR1D2 (nuclear receptor subfamily 1 group D member 2) [NCBI Gene 9975]
- **Diseases:** colorectal cancer (MONDO:0005575)

## Full-text entities

- **Genes:** NR1D2 (nuclear receptor subfamily 1 group D member 2) [NCBI Gene 9975] {aka BD73, EAR-1R, REVERBB, REVERBbeta, RVR}
- **Diseases:** tumor (MESH:D009369), CRC (MESH:D015179)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12816352/full.md

## References

21 references — full list in the complete paper: https://tomesphere.com/paper/PMC12816352/full.md

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Source: https://tomesphere.com/paper/PMC12816352