# Editorial: Synthetic biology and metabolomics: novel insight in oncology research

**Authors:** Ruby Dhar, Karthikeyan Pethusamy, Manash K. Paul, Subhradip Karmakar

PMC · DOI: 10.3389/fbioe.2025.1768397 · Frontiers in Bioengineering and Biotechnology · 2026-01-06

## Full-text entities

- **Genes:** UBD (ubiquitin like modifier D) [NCBI Gene 10537] {aka FAT10, UBD-3}, PROM1 (prominin 1) [NCBI Gene 8842] {aka AC133, CD133, CORD12, MCDR2, MSTP061, PROML1}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, TG (thyroglobulin) [NCBI Gene 7038] {aka AITD3, TGN}, EREG (epiregulin) [NCBI Gene 2069] {aka EPR, ER, Ep}, PIK3R1 (phosphoinositide-3-kinase regulatory subunit 1) [NCBI Gene 5295] {aka AGM7, GRB1, IMD36, p85, p85-ALPHA, p85alpha}, SLC1A1 (solute carrier family 1 member 1) [NCBI Gene 6505] {aka DCBXA, EAAC1, EAAT3, SCZD18, hEAAC1}, ADAP1 (ArfGAP with dual PH domains 1) [NCBI Gene 11033] {aka CENTA1, GCS1L, p42IP4}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, LAMB3 (laminin subunit beta 3) [NCBI Gene 3914] {aka AI1A, BM600-125KDA, JEB1A, JEB1B, LAM5, LAMNB1}, CHML (CHM like Rab escort protein) [NCBI Gene 1122] {aka REP2}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, TPO (thyroid peroxidase) [NCBI Gene 7173] {aka MSA, TDH2A, TPX}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, SLC44A3 (solute carrier family 44 member 3) [NCBI Gene 126969] {aka CTL3}, LOX (lysyl oxidase) [NCBI Gene 4015] {aka AAT10}
- **Diseases:** metastasis (MESH:D009362), nodes (MESH:D012804), melanoma (MESH:D008545), inflammation (MESH:D007249), pancreatic adenocarcinoma (MESH:D010190), autoimmune complications (MESH:D020274), tumorigenic (MESH:D002471), cancer (MESH:D009369), thyroid immune-related adverse events (MESH:D002318), breast cancer (MESH:D001943), collagen (MESH:D003095), lymph nodes (MESH:D000072717), lymphoma (MESH:D008223), thyroid dysfunction (MESH:D013959), oncogenesis (MESH:D063646), uveal melanoma (MESH:C536494), esophageal carcinoma (MESH:D004938), triple (MESH:C536008), sarcoma (MESH:D012509), HCC (MESH:D006528), thyroid and kidney chromophobe carcinomas (MESH:D002292), glioblastoma (MESH:D005909)
- **Chemicals:** raffinose (MESH:D011887), immune (-), choline (MESH:D002794), inosine monophosphate (MESH:D007291), gentiobiose (MESH:C100052), carbohydrates (MESH:D002241), phosphatidic acid (MESH:D010712), acylcarnitines (MESH:C116917), triglyceride (MESH:D014280), limaprost (MESH:C059238), sucrose (MESH:D013395), testosterone (MESH:D013739), nucleotides (MESH:D009711), imatinib (MESH:D000068877), melezitose (MESH:C005190), cholesterol (MESH:D002784), N-alpha-acetyl-l-lysine (MESH:C002315)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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Source: https://tomesphere.com/paper/PMC12816327