# Characterizing the tuberculosis and type 2 diabetes mellitus comorbidity in a South African cohort using untargeted GCxGC-TOFMS metabolomics

**Authors:** Karla Reinecke, Léanie Kleynhans, Katharina Ronacher, Du Toit Loots

PMC · DOI: 10.1007/s11306-025-02389-y · Metabolomics · 2026-01-19

## TL;DR

The study explores how tuberculosis and type 2 diabetes interact metabolically in a South African group, revealing disrupted amino acid and lipid metabolism linked to immune suppression.

## Contribution

The paper provides a novel metabolic characterization of TB-T2DM comorbidity using untargeted GCxGC-TOFMS metabolomics in a specific cohort.

## Key findings

- TB-T2DM patients show reduced metabolites in tryptophan, nucleotide, and tyrosine pathways, indicating metabolic disruptions.
- Altered lipid metabolism and glycine conjugates suggest NAD⁺ imbalance and microbial dysbiosis in comorbid patients.
- Findings imply synergistic metabolic stress and immune suppression, linking TB and T2DM progression.

## Abstract

Tuberculosis (TB) and type 2 diabetes mellitus (T2DM) are highly prevalent diseases resulting in high mortality rates globally. Furthermore, T2DM increases susceptibility to TB and vice versa, worsening disease outcomes. This comorbidity is, however, not well described nor understood, despite its rising prevalence globally.

This investigation aimed to better characterize the urinary metabolic profiles of patients with the TB and T2DM comorbidity in a South African cohort, to better understand its metabolic basis and associated clinical implications.

Using untargeted GCxGC-TOFMS metabolomics, urine samples from 17 patients with TB and T2DM and 34 healthy controls were analyzed and statistically compared to identify significantly altered urinary metabolites.

TB-T2DM comorbid patients were characterized by altered metabolism of: (1) tryptophan and kynurenine (reduced kynurenic acid, anthranilic acid, picolinic acid) associated with changes to NAD+ synthesis and a redox imbalance, (2) nucleotides (reduced 3-aminoisobutyric acid, orotic acid, thymine, β-alanine, adenine, hypoxanthine), (3) tyrosine (reduced 3,4-dihydroxyphenylglycol, 4-hydroxy-3-methoxyphenylglycol, hydroxyphenylpyruvate), (4) lipids (reduced dec-2-enedioate, adipic acid, methylmalonic acid), (5) reduced concentrations of various glycine conjugates associated with glycine depletion, and (6) reduced urinary concentrations of various gut microbial metabolites indicative of microbial dysbiosis.

These results indicate several metabolic disruptions to amino acids, nucleotides, lipids, NAD⁺ homeostasis and the host microbiome, in TB-T2DM patients, mainly driven by inflammation and oxidative stress. Overall, the findings indicate synergistic amplification of metabolic stress, associated with immune suppression and TB-T2DM disease progression, and subsequently suggests how TB increases T2DM susceptibility and vice versa, as foundation for further investigations.

The online version contains supplementary material available at 10.1007/s11306-025-02389-y.

## Linked entities

- **Chemicals:** kynurenic acid (PubChem CID 3845), anthranilic acid (PubChem CID 227), picolinic acid (PubChem CID 1018), 3-aminoisobutyric acid (PubChem CID 64956), orotic acid (PubChem CID 967), thymine (PubChem CID 1135), β-alanine (PubChem CID 239), adenine (PubChem CID 190), hypoxanthine (PubChem CID 135398638), 3,4-dihydroxyphenylglycol (PubChem CID 91528), 4-hydroxy-3-methoxyphenylglycol (PubChem CID 10805), hydroxyphenylpyruvate (PubChem CID 979), adipic acid (PubChem CID 196), methylmalonic acid (PubChem CID 487)
- **Diseases:** tuberculosis (MONDO:0018076), type 2 diabetes mellitus (MONDO:0005148)

## Full-text entities

- **Genes:** CXCL8 (C-X-C motif chemokine ligand 8) [NCBI Gene 3576] {aka GCP-1, GCP1, IL8, LECT, LUCT, LYNAP}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, NAMPT (nicotinamide phosphoribosyltransferase) [NCBI Gene 10135] {aka 1110035O14Rik, PBEF, PBEF1, VF, VISFATIN}, TDO2 (tryptophan 2,3-dioxygenase) [NCBI Gene 6999] {aka HYPTRP, TDO, TO, TPH2, TRPO}, GCLC (glutamate-cysteine ligase catalytic subunit) [NCBI Gene 2729] {aka CNSHA7, GCL, GCS, GLCL, GLCLC}, IDO1 (indoleamine 2,3-dioxygenase 1) [NCBI Gene 3620] {aka IDO, IDO-1, INDO}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, INS (insulin) [NCBI Gene 3630] {aka IDDM, IDDM1, IDDM2, ILPR, IRDN, MODY10}, AFMID (arylformamidase) [NCBI Gene 125061] {aka FKF, KF, KFA}, Grin1 (glutamate receptor, ionotropic, NMDA1 (zeta 1)) [NCBI Gene 14810] {aka GluN1, GluRdelta1, GluRzeta1, M100174, NMD-R1, NMDAR1}, VIP (vasoactive intestinal peptide) [NCBI Gene 7432] {aka PHM27}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, GSS (glutathione synthetase) [NCBI Gene 2937] {aka CNSHA6, GSHS, HEL-S-64p, HEL-S-88n}, GCLM (glutamate-cysteine ligase modifier subunit) [NCBI Gene 2730] {aka GLCLR}
- **Diseases:** Latent TB (MESH:D055985), fever (MESH:D005334), pulmonary inflammation (MESH:D011014), diarrhea (MESH:D003967), inflammation (MESH:D007249), acute lung injury (MESH:D055371), metabolic disease (MESH:D008659), smoking (MESH:D015208), fatty liver disease (MESH:D005234), pancreatic dysfunction (MESH:D010195), DM (MESH:D003920), respiratory infections (MESH:D012141), impaired insulin secretion (MESH:D007333), emphysema (MESH:D004646), type 1 (MESH:D003922), glucose intolerance (MESH:D018149), weight loss (MESH:D015431), constipation (MESH:D003248), metabolic dysregulation (MESH:D021081), gut dysbiosis (MESH:D064806), AIDS (MESH:D000163), death (MESH:D003643), M. tb infection (MESH:C566367), cough (MESH:D003371), cancer (MESH:D009369), chronic bronchitis (MESH:D029481), T2DM (MESH:D003924), HIV (MESH:D015658), asthma (MESH:D001249), M.tb infection (MESH:D014376), hyperlipidemia (MESH:D006949), pulmonary TB (MESH:D014397), mitochondrial damage (MESH:D028361), infected (MESH:D007239), hyperinsulinemia (MESH:D006946), obesity (MESH:D009765), latent (MESH:D000085343), pancreatic damage (MESH:D010182), Hyperglycemia (MESH:D006943)
- **Chemicals:** acetyl-CoA (MESH:D000105), NAD+ (MESH:D009243), UTP (MESH:D014544), PRPP (MESH:D010754), ornithine (MESH:D009952), Homovanillic acid (MESH:D006719), NE (MESH:D009638), alcohol (MESH:D000438), adenine (MESH:D000225), 3-aminoisobutyric acid (MESH:C033435), cyclohexylamine (MESH:D003514), Nucleotide (MESH:D009711), isobutyryl-CoA (MESH:C050106), CTP (MESH:D003570), histidine (MESH:D006639), citrulline (MESH:D002956), H2O2 (MESH:D006861), orotic acid (MESH:D009963), Dicarboxylic acid (MESH:D003998), MOX-HCl (MESH:C005214), pyrimidine (MESH:C030986), isoleucine (MESH:D007532), NMN (MESH:D009537), aspirin (MESH:D001241), polyol (MESH:C024617), biguanides (MESH:D001645), 2,6-dihydroxybenzoic acid (MESH:C412605), 4-hydroxy-3-methoxyphenylglycol (MESH:D008734), picolinic acid (MESH:C030614), Rifampicin (MESH:D012293), Trans-3'-hydroxycotinine (MESH:C001381), IMP (MESH:D007291), UMP (MESH:D014542), procyanidins (MESH:D044945), helium (MESH:D006371), AMP (MESH:D000249), cAMP (MESH:D000242), Tyrosine (MESH:D014443), 3-phenyl butyric acid (MESH:C036032), normetanephrine (MESH:D009647), syringic acid (MESH:C001945), indoxyl (MESH:C034082), ATP (MESH:D000255), steroid (MESH:D013256), adipic acid (MESH:C029900), beta-alanine (MESH:D015091), ROS (MESH:D017382), Glutamine (MESH:D005973), thymine (MESH:D013941), 2-methylcrotonyl-CoA (-), metformin (MESH:D008687), acetonitrile (MESH:C032159), Lu (MESH:D008187), DA (MESH:D004298), Kynurenic acid (MESH:D007736), cysteine (MESH:D003545), Glycine amide ribonucleotide (MESH:C014978), creatinine (MESH:D003404), Nicotine (MESH:D009538), Syringol (MESH:C010120)
- **Species:** Mycobacterium tuberculosis (species) [taxon 1773], Bacteroides (genus) [taxon 816], Homo sapiens (human, species) [taxon 9606], Lactobacillus (genus) [taxon 1578], gut metagenome (species) [taxon 749906], Mus musculus (house mouse, species) [taxon 10090], Mycobacteriales (order) [taxon 85007]
- **Cell lines:** A549 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_0023)

## Full text

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## Figures

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## References

16 references — full list in the complete paper: https://tomesphere.com/paper/PMC12815989/full.md

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Source: https://tomesphere.com/paper/PMC12815989