# BAP1 Loss as a Marker of Aggressive Clear Cell Renal Cell Carcinoma: Three Cases With Spinal Metastases

**Authors:** Nektarios Alevizopoulos, Dimitrios Alexandris, Vaios Oreopoulos, Georgios N Kanellopoulos

PMC · DOI: 10.7759/cureus.99724 · 2025-12-20

## TL;DR

This paper reports three cases of aggressive kidney cancer with BAP1 loss linked to spinal metastases and poor response to treatment.

## Contribution

The study highlights BAP1 loss as a marker for aggressive clear cell renal cell carcinoma with resistance to therapy.

## Key findings

- All three patients showed BAP1 loss and presented with spinal metastases at diagnosis.
- None of the patients responded to radiotherapy or immunotherapy combined with axitinib.
- BAP1 loss may indicate early metastasis, reduced survival, and treatment resistance in ccRCC.

## Abstract

Mutations play a pivotal role in the pathogenesis of renal cell carcinoma. Among these, alterations in the BRCA1-associated protein 1 (BAP1) gene are frequently identified in clear cell renal cell carcinoma (ccRCC) and have emerged as adverse prognostic and predictive biomarkers. We present three cases illustrating BAP1 loss as a key molecular event in a subset of ccRCC associated with aggressive clinical behavior and potential resistance to immunotherapy. Three patients with ccRCC and histologically confirmed thoracic vertebral metastases were retrospectively reviewed. All three demonstrated loss of BAP1 immunostaining and presented with symptomatic spinal involvement at initial diagnosis. None exhibited a meaningful clinical response to localized palliative radiotherapy or to systemic therapy consisting of immunotherapy in combination with axitinib. These observations suggest that BAP1 loss in ccRCC may be associated with early spinal metastatic presentation, reduced survival, and resistance to commonly used therapeutic regimens. Incorporating routine immunohistochemical assessment of BAP1 status into diagnostic evaluation may facilitate earlier identification of aggressive disease and support the development of more individualized treatment strategies aimed at improving clinical outcomes.

## Linked entities

- **Genes:** BAP1 (BRCA1 associated deubiquitinase 1) [NCBI Gene 8314]
- **Chemicals:** axitinib (PubChem CID 3086685)
- **Diseases:** renal cell carcinoma (MONDO:0005086), clear cell renal cell carcinoma (MONDO:0005005)

## Full-text entities

- **Genes:** BAP1 (BRCA1 associated deubiquitinase 1) [NCBI Gene 8314] {aka HUCEP-13, KURIS, TPDS1, UBM2, UCHL2, UVM2}
- **Diseases:** Spinal Metastases (MESH:D009362), Clear Cell Renal Cell Carcinoma (MESH:D002292)
- **Chemicals:** axitinib (MESH:D000077784)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12815482/full.md

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Source: https://tomesphere.com/paper/PMC12815482