# Genome-wide CRISPR screen identified NEK6 as a determinant of sensitivity to CDK4/6 inhibitor in endometrial cancer

**Authors:** Fangfang Jian, Chongying Zhu, Yiwei Wang, Tianyu Zhou, Chenmin Yang, Weiwei Feng

PMC · DOI: 10.3389/fphar.2025.1725886 · 2026-01-05

## TL;DR

A CRISPR screen found that NEK6 levels affect how well CDK4/6 inhibitors work in endometrial cancer, suggesting a new treatment strategy.

## Contribution

NEK6 is identified as a novel synthetic lethal target for CDK4/6 inhibitors in endometrial cancer.

## Key findings

- NEK6 levels determine the anti-tumor effects of CDK4/6 inhibitors in endometrial cancer.
- Combined inhibition of NEK6 and CDK4/6 suppresses tumor growth in vitro and in vivo.
- NEK6 promotes YBX1 phosphorylation and activation of CDK2 and bcl2 transcription.

## Abstract

Endometrial cancer (EC) harbors highly recurrent cell cycle pathway alterations, especially hyperactivation of the CCND1/CDK4/6 axis, raising the potential for use of CDK4/6 inhibitors in these cancers. In this study, we performed a genome-wide CRISPR-Cas9-based knockout screen to identify genes that modify the response to CDK4/6 inhibitors. We found that NIMA-related kinase-6 (NEK6) levels determine the anti-tumor effects of CDK4/6 inhibitors and that NEK6 was a synthetic lethal target of CDK4/6 inhibitors in EC. We further demonstrated that combined inhibition of NEK6 and CDK4/6 resulted in marked suppression of tumor growth in vitro and in vivo. Mechanistically, NEK6 bound to Y-box binding protein-1 (YBX1) in the cytoplasm and facilitated its phosphorylation at serine 102 (p-YBX1S102), which promoted YBX1 nuclear translocation and further activated CDK2 and bcl2 transcription. As such, these data provided robust pre-clinical mechanistic evidence of synergy between NEK6 and CDK4/6 inhibitors and delineated a path for translation of these findings to preliminary clinical studies in EC patients.

## Linked entities

- **Genes:** NEK6 (NIMA related kinase 6) [NCBI Gene 10783], CCND1 (cyclin D1) [NCBI Gene 595], CDK4 (cyclin dependent kinase 4) [NCBI Gene 1019], CDK6 (cyclin dependent kinase 6) [NCBI Gene 1021], YBX1 (Y-box binding protein 1) [NCBI Gene 4904], CDK2 (cyclin dependent kinase 2) [NCBI Gene 1017], BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596]
- **Proteins:** NEK6 (serine/threonine-protein kinase NEK5)
- **Diseases:** endometrial cancer (MONDO:0002447)

## Full-text entities

- **Genes:** YBX1 (Y-box binding protein 1) [NCBI Gene 4904] {aka BP-8, CBF-A, CSDA2, CSDB, DBPB, EFI-A}, NEK6 (NIMA related kinase 6) [NCBI Gene 10783] {aka SID6-1512}, BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596] {aka Bcl-2, PPP1R50}, CCND1 (cyclin D1) [NCBI Gene 595] {aka BCL1, D11S287E, PRAD1, U21B31}, CDK2 (cyclin dependent kinase 2) [NCBI Gene 1017] {aka CDKN2, p33(CDK2)}
- **Diseases:** EC (MESH:D016889), cancers (MESH:D009369)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12813190/full.md

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Source: https://tomesphere.com/paper/PMC12813190