# Clostridium butyricum extracellular vesicles remodel the transcriptional network of pyroptosis-related genes in LPS-stimulated macrophages

**Authors:** Qingyu Zhang, Kailun He, Mohd Shafiq Aazmi, Mohd Fakharul Zaman Raja Yahya

PMC · DOI: 10.3389/fimmu.2025.1686347 · Frontiers in Immunology · 2026-01-05

## TL;DR

This study shows that Clostridium butyricum extracellular vesicles can change how macrophages respond to inflammation by affecting key genes involved in pyroptosis.

## Contribution

The study identifies how C. butyricum EVs modulate a network of pyroptosis-related genes in LPS-stimulated macrophages.

## Key findings

- C. butyricum EVs significantly affect the expression of pyroptosis-related genes like IL-18 and IL-33.
- EVs regulate 14 pyroptosis-related genes in a concentration-dependent manner, including upregulating IL-6 and P2rx7.
- A strong positive correlation exists between IL-6 and P2rx7, and a negative correlation between ZBP1 and P2rx7.

## Abstract

Extracellular vesicles (EVs) of probiotics are an important pathway for probiotics to exert probiotic effects. EVs of Clostridium butyricum (C. butyricum) has great potential in immunotherapy. The aim of this study is to investigate the regulatory effect of C. butyricum EVs on the pyroptosis-related gene network in LPS-stimulated macrophages and explore its potential molecular mechanisms.

Differential centrifugation was used to isolate C. butyricum EVs, and EVs were characterized by transmission electron microscopy, NTA, and ZETA potential. PI staining was employed to confirm the stimulatory effect of LPS on RAW264.7 cells. Transcriptome sequencing and qPCR were performed to validate the regulatory effects of EVs on pyroptosis-related genes (PRGs) in LPS-stimulated RAW264.7 cells.

C. butyricum EVs exhibited a bilayer membrane structure with a median particle size of 144.4 ± 85.7 nm and a ZETA potential of -37.56 ± 1.08 mV. PI staining showed that LPS induced cell death in RAW264.7 macrophages, while EV treatment significantly affected the expression of pyroptosis-related genes IL-18 and IL-33 (q < 0.05). Transcriptome analysis revealed that C. butyricum EVs induce inflammation and cytokine secretion in RAW264.7 macrophages through the JAK-STAT signaling pathway and Cytokine receptor interaction. EVs pretreatment (10/20 μg/mL) regulated the expression of 14 PRGs in a concentration-related manner, including significant upregulation of IL-6 and P2rx7 (q < 0.01) and inhibition of ZBP1 and Tnf (q < 0.05). The gene interaction network showed a positive correlation (r=0.82) between IL-6 and P2rx7, and a negative correlation (r=-0.75) between ZBP1 and P2rx7.

C. butyricum EVs remodel the pyroptosis-related regulatory network by modulating key genes such as IL-6, P2rx7, and ZBP1, suggesting their potential role in fine-tuning LPS-induced inflammatory responses in macrophages.

## Linked entities

- **Genes:** IL18 (interleukin 18) [NCBI Gene 3606], IL33 (interleukin 33) [NCBI Gene 90865], IL6 (interleukin 6) [NCBI Gene 3569], P2RX7 (purinergic receptor P2X 7) [NCBI Gene 5027], ZBP1 (Z-DNA binding protein 1) [NCBI Gene 81030], TNF (tumor necrosis factor) [NCBI Gene 7124]
- **Species:** Clostridium butyricum (taxon 1492), Mus musculus (taxon 10090)

## Full-text entities

- **Diseases:** inflammation (MESH:D007249)
- **Chemicals:** LPS (MESH:D008070), PI (MESH:D010716)
- **Species:** Clostridium butyricum (species) [taxon 1492]

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12812611/full.md

## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12812611/full.md

## References

60 references — full list in the complete paper: https://tomesphere.com/paper/PMC12812611/full.md

---
Source: https://tomesphere.com/paper/PMC12812611