# Case Report: genotype–phenotype correlations in FLNA mutations: insights from a case of multisystem dysfunction

**Authors:** Jie Liu, Xin Pan, Lina Qiao, Yi Liao, Zhongqiang Liu

PMC · DOI: 10.3389/fgene.2025.1693117 · Frontiers in Genetics · 2026-01-05

## TL;DR

This case report explores how a specific FLNA mutation in a male infant leads to severe multisystem dysfunction and highlights the importance of monitoring multiple organs in such cases.

## Contribution

The study expands the known phenotypic spectrum of FLNA deficiency by linking a nonsense mutation to fatal complications like sepsis.

## Key findings

- The FLNA nonsense mutation (c.5265C>G; p.Tyr1755*) was classified as likely pathogenic and maternally inherited.
- The patient exhibited multisystem dysfunction, including heart, bowel, and lung issues, leading to fatal sepsis.
- The case adds to the understanding of genotype–phenotype correlations in FLNA mutations.

## Abstract

Filamin A (FLNA) mutations are associated with the development of numerous diseases and disorders. Although recent studies have shed light on genotype–phenotype relationships, the evidence remains fragmented.

Herein, we report the case of a male infant with an FLNA nonsense mutation (c.5265C>G; p.Tyr1755*) identified through trio whole-exome sequencing. The patient exhibited multisystem dysfunction, including periventricular nodular heterotopia, congenital heart disease (perimembranous ventricular septal defect), congenital short bowel syndrome, lung disease, and fatal sepsis. We analyzed this case along with a systematic review of 62 cases of male patients with FLNA mutations to explore genotype–phenotype relationships. Results: Following the American College of Medical Genetics and Genomics and the Association for Molecular Pathology guidelines, the variant was classified as likely pathogenic (PVS1, PM2, and PP3). Segregation analysis confirmed maternal inheritance. Standard genetic testing (karyotype and CGH-array) results were unremarkable.

This case expands the phenotypic spectrum of FLNA deficiency, linking a nonsense mutation to a severe clinical course with fatal complications such as necrotizing enterocolitis and sepsis, highlighting the need for vigilant multi-organ monitoring.

## Linked entities

- **Genes:** FLNA (filamin A) [NCBI Gene 2316]
- **Diseases:** periventricular nodular heterotopia (MONDO:0020341), congenital heart disease (MONDO:0005453), congenital short bowel syndrome (MONDO:0014097), lung disease (MONDO:0005275), necrotizing enterocolitis (MONDO:0004639)

## Full-text entities

- **Genes:** FLNA (filamin A) [NCBI Gene 2316] {aka ABP-280, ABPX, CSBS, CVD1, FGS2, FLN}
- **Diseases:** sepsis (MESH:D018805), congenital short bowel syndrome (MESH:D007418), necrotizing enterocolitis (MESH:D020345), FLNA deficiency (MESH:C537932), multisystem dysfunction (MESH:D019578), ventricular septal defect (MESH:D006345), congenital heart disease (MESH:D006330), lung disease (MESH:D008171), periventricular nodular heterotopia (MESH:D054091)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** c.5265C>G, p.Tyr1755*

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12812397/full.md

## References

34 references — full list in the complete paper: https://tomesphere.com/paper/PMC12812397/full.md

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Source: https://tomesphere.com/paper/PMC12812397