# Optimization of lipid nanoparticles loaded with ribonucleoprotein-oligonucleotide complexes for in vivo delivery of a CRISPR/Cas9 system targeting hepatitis B virus

**Authors:** Rupaly Akhter, Bouchra Kitab, Mohammad Enamul Hoque Kayesh, Rina Shimizu, Haruno Onuma, Naoki Yamamoto, Shintaro Ogawa, Masaya Sugiyama, Yasuhito Tanaka, Yusuke Sato, Michinori Kohara, Kyoko Tsukiyama-Kohara

PMC · DOI: 10.1016/j.virusres.2025.199682 · 2025-12-24

## TL;DR

Researchers optimized lipid nanoparticles to deliver a CRISPR/Cas9 system targeting hepatitis B virus in mice, achieving significant suppression of viral replication.

## Contribution

A new lipid nanoparticle formulation (CL4F11_ζ−2) combined with heat-treated RNA significantly improved in vivo CRISPR/Cas9 delivery for HBV suppression.

## Key findings

- CL4F11_ζ−2 LNP/WJ11-Cas9 significantly reduced serum HBV levels in mice.
- Heat treatment of WJ11 sgRNA enhanced the efficacy of LNP-based CRISPR/Cas9 delivery.
- The optimized LNP formulation reduced hepatic HBV DNA, cccDNA, HBsAg, and HBcrAg levels.

## Abstract

•LNP-mediated in vivo delivery of gRNAs/Cas9 systems has been investigated.•We investigated 3 LNP candidates for inhibition of HBV replication in vivo.•CL4F11_ζ−2 LNP/WJ11-Cas9 showed significant suppression of serum HBV level.•Heat treatment of WJ11 sgRNA may improve the efficacy of LNP-Cas9.

LNP-mediated in vivo delivery of gRNAs/Cas9 systems has been investigated.

We investigated 3 LNP candidates for inhibition of HBV replication in vivo.

CL4F11_ζ−2 LNP/WJ11-Cas9 showed significant suppression of serum HBV level.

Heat treatment of WJ11 sgRNA may improve the efficacy of LNP-Cas9.

Patients with chronic hepatitis B virus (HBV) infection may benefit from clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein 9 (Cas9)-based gene therapy. We previously identified a guide RNA (WJ11) that suppressed HBV replication in vitro and in vivo; however, we were unable to achieve delivery at clinically feasible doses in vivo using an adeno-associated virus (AAV) vector. Lipid nanoparticle (LNP)-based WJ11/Cas9 ribonucleoprotein-oligonucleotide complex delivery suppressed HBV replication by 2–3-fold more than did AAV-based delivery. In the present study, we investigated the HBV replication-suppressive effects of LNP/WJ11/Cas9 complexes after intravenous administration to persistently HBV genotype C-infected humanized chimeric mice. CL4H6 (ionizable lipid) LNPs were selected as the first candidate for WJ11/Cas9 delivery based on their reported high encapsulation efficiency; however, no significant anti-HBV effect was noted in serum or hepatic tissue. The ionizable lipid candidate CL4F11_ε-3 improved absolute serum HBV values to a certain degree but had no significant effect on hepatic HBV DNA or covalently closed circular (ccc)DNA levels. CL4F11_ζ-2 LNP/WJ11/Cas9, a new complex prepared through structural optimization of the ionizable lipid and heat treatment of WJ11, showed suppressive effect for serum viral load along with a reduction of hepatic HBV DNA, HBV cccDNA, HBsAg, and HBcrAg levels when compared with controls. Therefore, LNP-based delivery of this CRISPR/Cas9 formula holds promise for the treatment of chronic HBV infection.

## Linked entities

- **Proteins:** cas9 (type II CRISPR RNA-guided endonuclease Cas9)
- **Diseases:** chronic hepatitis B virus infection (MONDO:0005366)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Diseases:** chronic hepatitis B virus (HBV) infection (MESH:D019694), HBV infection (MESH:D006509)
- **Chemicals:** CL4F11 (-), oligonucleotide (MESH:D009841), Lipid (MESH:D008055)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Hepatitis B virus (no rank) [taxon 10407], Homo sapiens (human, species) [taxon 9606], Adeno-associated virus (species) [taxon 272636]

## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12811683/full.md

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Source: https://tomesphere.com/paper/PMC12811683